PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_002530-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

NAC

Protein Properties

Length: 263aa MW: 30256 Da PI: 7.3224

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_002530-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	143.1	1.6e-44	4	150	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...................kvkaeekewyfFskrdkkyatgkrknra 77 lppG+rF Pt+eel+++yL +k+egk+ +le+vi+ vdiyk++Pw+Lpk + ++ ++w+fF++r++++++g r++r+ NNU_002530-RA 4 LPPGYRFYPTEEELITFYLYNKLEGKREDLEHVIPVVDIYKLDPWQLPKlhhqlftfsfswvselagaLCLGDPEQWFFFIPRQERESRGGRPTRT 99 79**************************999***********768999999999888766652223677***************** PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 t+sgyWkatg+ v+s++ +++g+kkt+vfy+g+ap+g kt+W m+eyr+ NNU_002530-RA 100 TSSGYWKATGSPGYVYSSNYQVIGVKKTMVFYRGKAPSGCKTKWKMNEYRA 150 ***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-47	2	177	IPR003441	NAC domain
PROSITE profile	PS51005	48.08	4	177	IPR003441	NAC domain
Pfam	PF02365	5.0E-23	5	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MEGLPPGYRF YPTEEELITF YLYNKLEGKR EDLEHVIPVV DIYKLDPWQL PKLHHQLFTF 60 SFSWVSELAG ALCLGDPEQW FFFIPRQERE SRGGRPTRTT SSGYWKATGS PGYVYSSNYQ 120 VIGVKKTMVF YRGKAPSGCK TKWKMNEYRA IHGEATSSNS ATPVLRNEFS LCRVYVKSGC 180 LRSFDRRPLE GTTSNNQMQQ SHADRETTSH QTPPNVEKNS SHEILPSGDH AHTSILGEAI 240 NWMMFDGSTH LWEWDQLFLD LGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-36	4	177	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-36	4	177	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-36	4	177	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-36	4	177	17	165	NO APICAL MERISTEM PROTEIN
4dul_A	3e-36	4	177	17	165	NAC domain-containing protein 19
4dul_B	3e-36	4	177	17	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010245796.1	0.0	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	6e-79	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A1U7ZD02	0.0	A0A1U7ZD02_NELNU; NAC domain-containing protein 90-like
STRING	XP_010245796.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	3e-81	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]