PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_002489-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | NF-YB | ||||||||
Protein Properties | Length: 153aa MW: 17096.1 Da PI: 4.8953 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 44.6 | 3.5e-14 | 9 | 102 | 6 | 94 |
NF-YB 6 rflPianvsrimkkvlPana.....kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 ++lP a v r++k l + + kda e + fi ++++ a+d c++ kr+tin+dd++ al ++ f +++ pl++ l +r + NNU_002489-RA 9 EELPKAIVRRVVKDKLSRSSdqdeiNVHKDALLAFSESARIFIHYLSATANDICRESKRQTINADDVFKALEEIEFPEFIGPLQASLDVFRRKN 102 57999********9998654222226899***********************************************************999765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.6E-32 | 9 | 146 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.5E-11 | 10 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 8.95E-25 | 11 | 130 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MAKAASEVEE LPKAIVRRVV KDKLSRSSDQ DEINVHKDAL LAFSESARIF IHYLSATAND 60 ICRESKRQTI NADDVFKALE EIEFPEFIGP LQASLDVFRR KNAGKKAVTA KAKEANKKRK 120 MEEAAAAQNG NEECKENGKE EDNEDEDGSP DKE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 119 | RRKNAGKKAVTAKAKEANKKRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010245113.1 | 1e-106 | PREDICTED: DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A1U7YZN1 | 1e-105 | A0A1U7YZN1_NELNU; DNA polymerase epsilon subunit 3 | ||||
STRING | XP_010245113.1 | 1e-106 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 3e-40 | nuclear factor Y, subunit B11 |