PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_002463-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bZIP

Protein Properties

Length: 493aa MW: 55478.9 Da PI: 9.32

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_002463-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.1	2.5e-10	207	248	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L NNU_002463-RA 207 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQEL 248 6889*************************8766666655544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.8E-6	204	269	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.278	206	250	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.4E-7	207	248	IPR004827	Basic-leucine zipper domain
CDD	cd14708	8.02E-21	208	258	No hit	No description
SuperFamily	SSF57959	6.67E-7	208	250	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.5E-8	209	252	No hit	No description
PROSITE pattern	PS00036	0	211	226	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.4E-30	289	364	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MQDLWSLSSF NIFPFVVLFS VYKAVSPLVM LGIVMGFFSK KRERSHVFNL KKIFQYEEHV 60 KCIRQGSAFD FGELEQAIVL QEIKNRNDEA KRTFLTATRP AATLEMFPSW PMRFQQTPRG 120 SSKSGESTDS GSAQNTLSCK ADSQLEPASP ISKKGLDQSI DQKPIQQQHK VEMANDTSRA 180 GLSPNQQAKQ PEKRRGASST SEKTLDAKTL RRLAQNREAA RKSRLRKKAY VQQLESSRIK 240 LTQLEQELQR ARSQGLFLGA GGAAGGNISS GAAIFDMEYS RWLEDDQRHL SELRTGLNAH 300 LSDGDLRVIL DGYLVHYDEI FRLKAVAAKS DVFHLVTGMW ATPAERCFLW MGGFRPSELI 360 KILTPQLDTL TEQQFMGICG LQQSSQQAEE ALSQGLEQLH QSLSDTVATG ALSDGTLADN 420 LRQQTLHQMR RILTIRQAAR CFLAIGEYYN RLRALSSLWV SRPRENLISD ENSCQTTTEL 480 QMVQSAQNHF STF

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MQDLWSLSSF NIFPFVVLFS VYKAVSPLVM LGIVMGFFSK KRERSHVFNL KKIFQYEEHV  60
KCIRQGSAFD FGELEQAIVL QEIKNRNDEA KRTFLTATRP AATLEMFPSW PMRFQQTPRG  120
SSKSGESTDS GSAQNTLSCK ADSQLEPASP ISKKGLDQSI DQKPIQQQHK VEMANDTSRA  180
GLSPNQQAKQ PEKRRGASST SEKTLDAKTL RRLAQNREAA RKSRLRKKAY VQQLESSRIK  240
LTQLEQELQR ARSQGLFLGA GGAAGGNISS GAAIFDMEYS RWLEDDQRHL SELRTGLNAH  300
LSDGDLRVIL DGYLVHYDEI FRLKAVAAKS DVFHLVTGMW ATPAERCFLW MGGFRPSELI  360
KILTPQLDTL TEQQFMGICG LQQSSQQAEE ALSQGLEQLH QSLSDTVATG ALSDGTLADN  420
LRQQTLHQMR RILTIRQAAR CFLAIGEYYN RLRALSSLWV SRPRENLISD ENSCQTTTEL  480
QMVQSAQNHF STF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX887153	0.0	JX887153.1 Nelumbo nucifera bZIP protein (bZIP) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001289788.1	0.0	transcription factor TGA2
Refseq	XP_010244798.1	0.0	PREDICTED: transcription factor TGA2 isoform X1
Refseq	XP_010244803.1	0.0	PREDICTED: transcription factor TGA2 isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	L0CTJ5	0.0	L0CTJ5_NELNU; BZIP protein
STRING	XP_010244798.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-170	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]