PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_002283-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

GRF

Protein Properties

Length: 604aa MW: 65565 Da PI: 8.1665

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_002283-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.1	1.8e-24	223	267	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e NNU_002283-RA 223 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 267 79****************************************985 PP
2	QLQ	60.8	3.7e-21	153	189	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+P++Ll +++k NNU_002283-RA 153 GPFTPSQWMELEHQALIYKYITANAPIPSNLLIPLRK 189 59*******************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	9.6E-12	153	189	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.494	154	189	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.5E-15	154	187	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.663	223	267	IPR014977	WRC domain
Pfam	PF08879	7.2E-21	224	266	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence Send to blast
MDFGVVGLDS FMGSESGLAS LVSESEAKQK GYGSGFLKQE RSGTAEDDWR SFKMPRTDDL 60 SASKTMLLQQ RTPSLLRSNS LFADQPQQQM LSFSSPKSEG LLLSNDSVLA ERNLQNAMLP 120 YYHHPSSSYA RSTGLSSGSL NASMHGVLTG VRGPFTPSQW MELEHQALIY KYITANAPIP 180 SNLLIPLRKA LNPSGFSGLS AGSLRPSTLG WGSFHLGFSG NTDPEPGRCR RTDGKKWRCS 240 RDAVADQKYC ERHMNRGRHR SRKPVEGQTG HAVPGPTTTK VMPSASASVV SSSGASNSVA 300 ITQHQMKSLN TGAVSPSTTT HINRILLNKE KFGDQVQDSQ GMSVLSPSMN PKAKDFSVPK 360 QQIPFEDSSR MEFGLVSSDS LLNPSQRSSY MNCRNFSSSP ELNDREQQQP QHPLRHFIDD 420 WPKNRSDRSG IAWPEVEEIH SDRTQLSISI PVASSEFSSS SSSPTHEKLT LSPLRLSREF 480 DPIQMGLGVG SILNEPTQRQ TNWIPISWET SMGGPLGEVL NNTNNSTGDC KNSSALNLMT 540 EGWDGSPRLG SSPIGVLQKA TFGSLSNSSS GSSPRVENKT HDGSSLCDDL LGSAFVNSSS 600 IPSL

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence Send to blast

MDFGVVGLDS FMGSESGLAS LVSESEAKQK GYGSGFLKQE RSGTAEDDWR SFKMPRTDDL  60
SASKTMLLQQ RTPSLLRSNS LFADQPQQQM LSFSSPKSEG LLLSNDSVLA ERNLQNAMLP  120
YYHHPSSSYA RSTGLSSGSL NASMHGVLTG VRGPFTPSQW MELEHQALIY KYITANAPIP  180
SNLLIPLRKA LNPSGFSGLS AGSLRPSTLG WGSFHLGFSG NTDPEPGRCR RTDGKKWRCS  240
RDAVADQKYC ERHMNRGRHR SRKPVEGQTG HAVPGPTTTK VMPSASASVV SSSGASNSVA  300
ITQHQMKSLN TGAVSPSTTT HINRILLNKE KFGDQVQDSQ GMSVLSPSMN PKAKDFSVPK  360
QQIPFEDSSR MEFGLVSSDS LLNPSQRSSY MNCRNFSSSP ELNDREQQQP QHPLRHFIDD  420
WPKNRSDRSG IAWPEVEEIH SDRTQLSISI PVASSEFSSS SSSPTHEKLT LSPLRLSREF  480
DPIQMGLGVG SILNEPTQRQ TNWIPISWET SMGGPLGEVL NNTNNSTGDC KNSSALNLMT  540
EGWDGSPRLG SSPIGVLQKA TFGSLSNSSS GSSPRVENKT HDGSSLCDDL LGSAFVNSSS  600
IPSL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM488616	3e-60	AM488616.1 Vitis vinifera contig VV78X030262.6, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010273550.1	0.0	PREDICTED: growth-regulating factor 6-like isoform X2
Swissprot	Q6AWY3	1e-126	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A1U8BBH7	0.0	A0A1U8BBH7_NELNU; growth-regulating factor 6-like isoform X2
STRING	XP_010273541.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-110	growth-regulating factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]