PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_002193-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRAS
Protein Properties Length: 457aa    MW: 50818.1 Da    PI: 5.7636
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_002193-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS306.65.6e-94564542373
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl..fsevsPilk 92 
                    ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl+  f++AL  r a+  ++ +k l++ ++++ n   +++++++ +l  f++++P+++
  NNU_002193-RA  56 EQLLVHCANAIDSNDATLAQQILWVLNNIAPPDGDSNQRLTCGFLRALIVRAAK--TGSCKMLTAMANANANlalHAHKFSVIELasFVDLTPWHR 149
                    79****************************************************..5555555555555445333555555555588********* PP

           GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl...v 182
                    f++ +aN aIlea+eg + vHiiD++ ++++Q p+L++++a+Rpegpp +++T+ g+ + +      ++e +g+rL +fA++ +v +ef+v+    
  NNU_002193-RA 150 FGFTAANAAILEAIEGFSVVHIIDLSSTHCMQIPTLIDSIANRPEGPPFIKLTVAGATTDVppmLDLSYEDLGSRLVNFARSRNVGMEFRVIpssS 245
                    *********************************************************887798888899**********************97653 PP

           GRAS 183 akrledleleeLrvkp..........gEalaVnlvlqlhrll..........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258
                    ++ +++l +e+Lrv +          gEal+Vn++++lh+++           es +++s r+ +Lk+++sl+P+vvvvv+++ad +s++++ r+ 
  NNU_002193-RA 246 SDGFASL-IEQLRVVQqlvfaegggeGEALVVNCHMMLHYIPeetlgvtpysFESSTTSSLRTMFLKAIRSLEPTVVVVVDEDADFTSNNLVCRLR 340
                    3344444.67777766677777**99****************99999999886666777789********************************** PP

           GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.e 353
                    +a++y +  +d++++ lpr s++r+++E+  + ++i+nv+a+eg +r+er e +++W +r+++a F+ +p+se+   ++k++l  ++  g+ ++  
  NNU_002193-RA 341 SAFNYLWIPYDTVDTFLPRGSKQRQWYEAD-ICWKIENVIAQEGVQRVERLEPKSRWIQRMRNANFRGIPFSEESILEVKSMLDDHA-AGWGLKkA 434
                    ******************************.********************************************************.55555524 PP

           GRAS 354 esgslvlgWkdrpLvsvSaW 373
                    e++ lvl+Wk++++v+++aW
  NNU_002193-RA 435 EDEGLVLTWKGHNVVFATAW 454
                    567799************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.6929435IPR005202Transcription factor GRAS
PfamPF035141.9E-9156454IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MLQFTETPLP PSLHQYAINP YSDLTMSKNP FHRTRPWPGF PTSKALGNFG DANCMEQLLV  60
HCANAIDSND ATLAQQILWV LNNIAPPDGD SNQRLTCGFL RALIVRAAKT GSCKMLTAMA  120
NANANLALHA HKFSVIELAS FVDLTPWHRF GFTAANAAIL EAIEGFSVVH IIDLSSTHCM  180
QIPTLIDSIA NRPEGPPFIK LTVAGATTDV PPMLDLSYED LGSRLVNFAR SRNVGMEFRV  240
IPSSSSDGFA SLIEQLRVVQ QLVFAEGGGE GEALVVNCHM MLHYIPEETL GVTPYSFESS  300
TTSSLRTMFL KAIRSLEPTV VVVVDEDADF TSNNLVCRLR SAFNYLWIPY DTVDTFLPRG  360
SKQRQWYEAD ICWKIENVIA QEGVQRVERL EPKSRWIQRM RNANFRGIPF SEESILEVKS  420
MLDDHAAGWG LKKAEDEGLV LTWKGHNVVF ATAWVPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B9e-495045782475Protein SHORT-ROOT
5b3h_B4e-495045728421Protein SHORT-ROOT
5b3h_E4e-495045728421Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010272258.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN221e-180SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A1U8AVS80.0A0A1U8AVS8_NELNU; scarecrow-like protein 32
STRINGXP_010272258.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-179GRAS family protein