PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001887-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family CAMTA
Protein Properties Length: 1048aa    MW: 117402 Da    PI: 6.442
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001887-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-169.26.6e-2236100274
           CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLK 74 
                    l+ ++rwl++ ei++iL n+ k++++ e++++p+s         ++ryfrkDG++w+kkkdgkt++E+he+LK
  NNU_001887-RA  36 LEAQNRWLRPAEICEILRNYPKFRIAPEPPNKPPSM--------VLRYFRKDGHNWRKKKDGKTIKEAHERLK 100
                    5679*****************************974........67**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143733.41431157IPR005559CG-1 DNA-binding domain
SMARTSM010765.6E-1734117IPR005559CG-1 DNA-binding domain
PfamPF038592.4E-1737102IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.9E-6462549IPR013783Immunoglobulin-like fold
PfamPF018331.1E-7463548IPR002909IPT domain
SuperFamilySSF812962.18E-18463549IPR014756Immunoglobulin E-set
CDDcd002041.99E-13643755No hitNo description
SuperFamilySSF484032.64E-16649758IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.661650767IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.6E-17650759IPR020683Ankyrin repeat-containing domain
PfamPF000230.015696727IPR002110Ankyrin repeat
SMARTSM002480.0058696725IPR002110Ankyrin repeat
PROSITE profilePS500889.19696728IPR002110Ankyrin repeat
SMARTSM00248190735764IPR002110Ankyrin repeat
SuperFamilySSF525401.38E-8865922IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.083871893IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.444872901IPR000048IQ motif, EF-hand binding site
PfamPF006120.0019873892IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0046894916IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.597895919IPR000048IQ motif, EF-hand binding site
PfamPF006122.6E-4897916IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1048 aa     Download sequence    Send to blast
MLCVYQPQEN KHSVISQIKV QNSTYISRTD IEQILLEAQN RWLRPAEICE ILRNYPKFRI  60
APEPPNKPPS MVLRYFRKDG HNWRKKKDGK TIKEAHERLK GAKTNFGRMR DTEEVVPSSQ  120
MGSPMSSSFL TNNTQVPSQT MDTTSLNSTQ ASEYEDAESD NHQASSRYHS IFESQQSEDS  180
AVMNKMDANL LNSYYPDPCQ NNYQGKKPAV PGLDFVSLVQ ENRGRDGNDA RFLPTSEPQK  240
QVNLTCWDVL EHCTTGFQNA SFQPLILSSQ PAAIGVIPKE ESVIPGQFLA EEFTNPEIAG  300
QPDGQEKWQT ASVDNSSYMS RWPKDQKLHP DPAYALEAFH MHPDQQNGHP VQNDLPIQIS  360
GAELASVLKS NSDHNLTMEG NPYNAKQPIE FSQTEEGLKK LDSFTRWMTK ELGEVDESHT  420
KLSSVDWNAV ENGTEVDNSG MSQAHLHSYL LSPSISQDQL FSIIDFSPNW AYTDSEVKVL  480
ITGTFLRTQE DAAKCKWSCM FGEVEVLAEV IGDGVLRCHA PPHTAGRVPF YVTRSNRLAC  540
SEVREFEYRV KHTRMDATNM SSSTNEILLH VRLGKLLSMG CSSHPTTLTS NVGEKAHISN  600
KISLLMKEDD DEWFHMVKLI LEEFSPDQIK DQLLQKLLKE KLHAWLLYKV IEDGKGPSVL  660
DKEGQGVLHL SAALGYDWAI APTVAAGVSI NFRDVNGWTA LHWAAFYGRE RTVVALVTLG  720
AAPGALTDPT PKFPSGRTPA DLASSNGHKG IAGYLAEAAL TSHLSSITLK DTKDGDAPEI  780
SGMKAVQTVS ERSATPGCDG DVLDGLSLKD SLTAVRNATQ AAARIHQVFR VQSFQRKQLT  840
EYGDNKFGMS DEHALSLLSV KTHRAGQHDD PLHSAAIRIQ NKFRGWKGRK EFLIIRQRIV  900
KIQAHVRGHQ VRKRYKNIVW SVGIVEKAIL RWRRKGSGLR GFRPEPLIEG SSTQNDPSKE  960
DDYDFLKEGR KQTEERLQKA LARVKSMAQY PEARDQYRRL LNVVSEFQDA KVMYDKVLNG  1020
SEEAGEGDDD LIELEALLDD DTFMATAC
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267840.10.0PREDICTED: calmodulin-binding transcription activator 3-like
TrEMBLA0A1U8AKK40.0A0A1U8AKK4_NELNU; calmodulin-binding transcription activator 3-like
STRINGXP_010267832.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains