PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001794-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 329aa    MW: 36213.6 Da    PI: 5.7033
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001794-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.6e-13125176155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i   A++++k+L+
  NNU_001794-RA 125 QRMTHIAVERNRRKQMNEYLAVLRSLMPAS---YVQRGDQASIIGGAINFVKELE 176
                    79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.12E-12123180No hitNo description
PROSITE profilePS5088815.212124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-17124191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-14125187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-10130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MALEAVVFPQ DLFSYGCKDL YSLGGGVGGW CYDIALEEDN NKCGLQMPDK NMEQGLAGNW  60
DSSPSSMVQN MKEWDANSSP EACTGDGGFF TGGGFSPVDA QAATSGRRKR RRTKSCKNKE  120
EVENQRMTHI AVERNRRKQM NEYLAVLRSL MPASYVQRGD QASIIGGAIN FVKELEQHLQ  180
SLEAQKRIKQ QSDAGFSSPF ADFFSFPQYS SSSTHCNNPA GSASSAAGSN ESTAENRSAI  240
ADIEVTMVES HANLKVLSKR RPKQLLKMVA GFHTLRLTIL HLNVTSVDQM VLYSFSVKVE  300
DECQLTSVDE IATAVYQMLG RIQEESELS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107111RKRRR
2107112RKRRRT
3125136RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010266731.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T41e-88BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1U8AL430.0A0A1U8AL43_NELNU; transcription factor bHLH94-like
STRINGXP_010266731.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-76bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]