PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_001699-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | bHLH | ||||||||
Protein Properties | Length: 207aa MW: 22900.5 Da PI: 7.0473 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.7 | 5.8e-10 | 50 | 100 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r+ +++Er RR ++ +++L++++P++ K + + i e+++ YIk+L+ NNU_001699-RA 50 KRKPSPQIERDRRVQMSGLYATLQSMIPNL----LHKATRVKIIEETIAYIKELE 100 5777899**********************5....48****************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.06E-7 | 48 | 97 | No hit | No description |
PROSITE profile | PS50888 | 13.033 | 49 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.5E-12 | 49 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.29E-12 | 49 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-7 | 50 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-6 | 55 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 2.5E-4 | 141 | 204 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MEGNHEDKDV SKLLLKLMEG YSDAAIAPLS EFSPSKEITI NAEAASCSRK RKPSPQIERD 60 RRVQMSGLYA TLQSMIPNLL HKATRVKIIE ETIAYIKELE ECLEELKRRK AAAIRALRLC 120 NHPNASSSVD VTVSGNVAFF EVSAMVRRGL VKEIFGVFDK HRVEVLAAGV AVHELELRLT 180 VTALIDGNGD DVGAAERIKT DLLTLLF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021290379.1 | 3e-48 | transcription factor TT8-like | ||||
TrEMBL | A0A061EPZ0 | 4e-45 | A0A061EPZ0_THECC; Uncharacterized protein | ||||
STRING | XP_010245381.1 | 4e-76 | (Nelumbo nucifera) |