PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001248-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 272aa    MW: 30213 Da    PI: 4.9585
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001248-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.42.1e-17551148
            NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
                   lppGfrFhPtdeel+++yL++kv+++k+   ++i+ vd++k+ePwdLp
  NNU_001248-RA  5 LPPGFRFHPTDEELITYYLTRKVSDSKFVS-RAIAVVDLNKCEPWDLP 51
                   79*************************988.89**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-27488IPR003441NAC domain
PROSITE profilePS5100514.9695160IPR003441NAC domain
PfamPF023655.3E-8648IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEGNLPPGFR FHPTDEELIT YYLTRKVSDS KFVSRAIAVV DLNKCEPWDL PAPKGEKSNW  60
VMHEYRLETK FTYKPIKEEW VVCRVFQKSA TSKKPEFTPL HASLESNCDA GTLMNELEGI  120
GLFPDPSSTV VNSSSSCFGA ISSNNNNSNN DISCCVVNPN MNWVPAREAT NDNNIAPLSW  180
PTPGLLSSNL SMNSMILRAL QLGGYQLQPR EKATMTDLSS SIHPDPVLQE NSRFITDLNS  240
NFPASSSSKA IDADAVQQQP LLFNLDSTWR SC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-122511261Stress-induced transcription factor NAC1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263909.11e-146PREDICTED: NAC domain-containing protein 92-like
TrEMBLA0A1U8AN461e-144A0A1U8AN46_NELNU; NAC domain-containing protein 92-like
STRINGXP_010263909.11e-145(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.12e-23NAC domain containing protein 58