PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_001193-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

G2-like

Protein Properties

Length: 366aa MW: 40772.4 Da PI: 7.2772

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_001193-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.2	1.6e-32	203	258	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 kpr++W+peLH+rF++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ NNU_001193-RA 203 KPRRCWSPELHRRFLHALQQLGGSHAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 258 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.047	200	260	IPR017930	Myb domain
SuperFamily	SSF46689	1.23E-18	201	261	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-29	201	261	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.3E-27	203	258	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-7	205	256	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MNPQPTMTIM ANYTENAHKC QTYMEALEEE RRKIQVFRRE LPLCLELVTQ AIETCRQQLA 60 TTTEYFPGQS ECSEETSSEA PVLEEFIPLK RCFSSEEDEE SNKPKNEDIN EKPGKKADWL 120 KSVQLWNQDP DPSLNQDLSR KPSVIESKKG GGAFHPFQRD DKLTAPSITV IPSSAQTTAA 180 ISSTADTING DNRGEDKSQS NRKPRRCWSP ELHRRFLHAL QQLGGSHAAT PKQIRELMKV 240 DGLTNDEVKS HLQKYRLHTR RPSPAVQNNG SPQPPQFVVV GGIWVPPHDY AAATETKGEL 300 NGVSGVTAHP TIYAPITAPS VPTVRSEQRQ KLSPRSPLQA EGRSSCKKDD DTHSNSPSTS 360 SSSRSY

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MNPQPTMTIM ANYTENAHKC QTYMEALEEE RRKIQVFRRE LPLCLELVTQ AIETCRQQLA  60
TTTEYFPGQS ECSEETSSEA PVLEEFIPLK RCFSSEEDEE SNKPKNEDIN EKPGKKADWL  120
KSVQLWNQDP DPSLNQDLSR KPSVIESKKG GGAFHPFQRD DKLTAPSITV IPSSAQTTAA  180
ISSTADTING DNRGEDKSQS NRKPRRCWSP ELHRRFLHAL QQLGGSHAAT PKQIRELMKV  240
DGLTNDEVKS HLQKYRLHTR RPSPAVQNNG SPQPPQFVVV GGIWVPPHDY AAATETKGEL  300
NGVSGVTAHP TIYAPITAPS VPTVRSEQRQ KLSPRSPLQA EGRSSCKKDD DTHSNSPSTS  360
SSSRSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-13	203	256	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-13	203	256	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-13	203	256	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-13	203	256	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-13	203	256	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-13	203	256	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-13	203	256	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-13	203	256	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-13	203	256	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-13	203	256	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-13	203	256	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-13	203	256	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010263063.1	0.0	PREDICTED: myb family transcription factor EFM-like isoform X2
Swissprot	Q9FPE8	1e-107	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A1U8A8T7	0.0	A0A1U8A8T7_NELNU; myb family transcription factor EFM-like isoform X2
STRING	XP_010263055.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	1e-105	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]