PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_001138-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

NF-YB

Protein Properties

Length: 155aa MW: 17392.7 Da PI: 4.3816

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_001138-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	74.5	1.6e-23	11	93	3	85
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 ++d lP a + +i+k++lP + ++++da++++ ec +efi +++se+++ c +e+++ti+++ +l al lGf+dy+e++ + NNU_001138-RA 11 KEDVSLPKATMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLISSESNEVCSQEEKRTIAPEHVLKALEVLGFHDYIEEVYA 93 68999**************************************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.2E-39	8	139	IPR009072	Histone-fold
SuperFamily	SSF47113	1.01E-35	12	141	IPR009072	Histone-fold
Pfam	PF00808	3.9E-21	15	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MEPMDIVGKS KEDVSLPKAT MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLISSESNE 60 VCSQEEKRTI APEHVLKALE VLGFHDYIEE VYAAYEQHKL ETLDSPKGGK WGSGAEMTEE 120 EALAEQQRMF AEARARMNGG MTIPKQSESD RGLES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	6e-35	12	134	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010262427.1	1e-112	PREDICTED: protein Dr1 homolog
Refseq	XP_010262433.1	1e-112	PREDICTED: protein Dr1 homolog
Swissprot	P49592	1e-85	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	A0A1U8AAX7	1e-110	A0A1U8AAX7_NELNU; protein Dr1 homolog
STRING	XP_010262418.1	1e-111	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	8e-90	nuclear factor Y, subunit B13

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]