PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_001121-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | ERF | ||||||||
Protein Properties | Length: 256aa MW: 28848.1 Da PI: 7.8505 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.6 | 4.7e-16 | 54 | 102 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +grWvAeI+d s ++ r +lg+f+ aeeAa a+++a++ l+g NNU_001121-RA 54 FLGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDRAEEAAMAYDNAARLLRG 102 67******.7*********42...36***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.5E-28 | 53 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.875 | 53 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.2E-36 | 53 | 116 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.70E-30 | 53 | 112 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-20 | 54 | 111 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.7E-7 | 54 | 65 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.2E-10 | 56 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-7 | 76 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDSIESPTSS SYHTQVPCRD HESEPDETEN FQESQVKIRG SALPIKASGS GRRFLGVRQR 60 PSGRWVAEIK DSSQKLRLWL GTFDRAEEAA MAYDNAARLL RGRNARTNFP YHENMKIHER 120 NYSLLRKNPR FSQLLQRAIM KNHWKFSSAS TSTHQKQGFE SGSIDVNSIV EETIVCSSSP 180 EKGLKCYGSQ ERDGLCGFSF RGCKVYSSVI VSPSFSASQC DQAEVQAEER KYEGTQSLEP 240 LFVHATGFLE SGFVQE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-15 | 53 | 115 | 14 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010262228.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF110-like | ||||
TrEMBL | A0A1U8AAI0 | 0.0 | A0A1U8AAI0_NELNU; ethylene-responsive transcription factor ERF110-like | ||||
STRING | XP_010262228.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-14 | related to AP2 11 |