PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001044-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Dof
Protein Properties Length: 303aa    MW: 32478 Da    PI: 7.984
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001044-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.24.3e-392585262
         zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                   +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+
  NNU_001044-RA 25 PNQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSK 85
                   6799******************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-252679IPR003851Zinc finger, Dof-type
PfamPF027013.3E-332783IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.6182983IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103167IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MQDLRTMGSA GVRIFGGDRR LRPHPNQALK CPRCDSLNTK FCYYNNYNLS QPRHFCKSCR  60
RYWTKGGVLR NVPVGGGCRK TKRSKSKPSP DPPKEKKATT ASHSSSESSS LTAATTTAAT  120
TEAASAPSSS SSAAGNTGLL NFPDSRMFLS QNPSPNFVET CMLDALEQPP PDGGIFATET  180
GSFTSLMTGS NPGLLGFNFP DVSPFRLHTQ QQQKMTNTEE EMKMQELTAG GFIDQTFPVE  240
LPGLQNNRTN GSSSGGGAGG ATGLDWPSGA DQGGSLFDLS SSVEQCYWGS TQWADNDQGL  300
YLP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261115.10.0PREDICTED: dof zinc finger protein DOF5.4-like
TrEMBLA0A1U8AGL60.0A0A1U8AGL6_NELNU; dof zinc finger protein DOF5.4-like
STRINGXP_010261115.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.12e-35OBF binding protein 4