PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_001019-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family YABBY
Protein Properties Length: 214aa    MW: 24152.5 Da    PI: 8.7999
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_001019-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY174.95.1e-5421772163
          YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkee.............lleelkveeenlk 83 
                    + + sse++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC++l  ++ +     ++  +++l+ ++  e             +  ++   ++ l+
  NNU_001019-RA   2 EYVPSSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLpGQRMDHHQLGFQVILEatnlnflpnvkaiICTKETEVDQFLE 97 
                    56789**************************************97666554443233333333333333344555577777754444444455556 PP

          YABBY  84 snvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                    ++v  ++  +t+ ss++ s+++++ +p+vp v++PPe++ r Psaynrf+keeiqrika+nP+i hreafs+aaknWa +
  NNU_001019-RA  98 KQVFCNDYRRTQSSSSSSSTSSQQMSPKVPYVVKPPERKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAAKNWARY 177
                    6666666777777777779999********************************************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.5E-556177IPR006780YABBY protein
SuperFamilySSF470951.44E-8121176IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.108.0E-5131176IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEYVPSSEHL CYVRCNFCNT VLAVGIPCKR LLDTVTVKCG HCSNLSFLST RPPLPGQRMD  60
HHQLGFQVIL EATNLNFLPN VKAIICTKET EVDQFLEKQV FCNDYRRTQS SSSSSSTSSQ  120
QMSPKVPYVV KPPERKHRLP SAYNRFMKEE IQRIKAANPE IPHREAFSTA AKNWARYVPH  180
PPTGSVSENN KNNERTSACA MESIDSTSKK LDST
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260708.11e-123PREDICTED: protein CRABS CLAW-like isoform X1
SwissprotQ76EJ05e-60YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A1U8AFJ71e-121A0A1U8AFJ7_NELNU; protein CRABS CLAW-like isoform X1
STRINGXP_010260708.11e-122(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.12e-56YABBY family protein