PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_000842-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Dof

Protein Properties

Length: 512aa MW: 55341.6 Da PI: 8.2351

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_000842-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.4	1.8e-39	147	207	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s NNU_000842-RA 147 PDKILPCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 207 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	140	204	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.5E-32	149	205	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.882	151	205	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	153	189	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MSEAKDPAIK LFGKTIPLTS NDETSAVSAI SGAPTAIAYA KDKLDEDRSS SAALQDEKSK 60 RAAAEQQRQQ KEKDPSGGKP TKPTGEDGGP PTSLKKLSDP ATSLEMIDEP QTASVEKEAA 120 TTKGCKTEEE QNETTTSIPQ EKTLKKPDKI LPCPRCNSMD TKFCYFNNYN VNQPRHFCKN 180 CQRYWTAGGT MRNVPVGAGR RKNKNSASHY RHITVSEALQ TTRTDAPDGV HHSALKPNGT 240 LLTFSSDSPL CESMASMLNL TEKTIRNCTR NGFNRAEEQR IPVSCGVENG DDRSSGCGSS 300 ITSSNCTEDG NRVSLQDPMM RNCNGFPPQI PCFPGTPWPY PWNSAQWSSA VPPPPAFCPS 360 SFPVSFYPTA TYWGCTLPAN WNIPWISPPS SSSSNGGSGS GPNSPLGKHS RDGSILKSNN 420 KEKADPSKES NSEKCLWIPK TLRIDDPGEA ARSSIWSTLG IKNNKADSIS AGGLFKVFQP 480 KSEEKNHTAG ASLVLQANPA ALSRSLNFHE TS

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MSEAKDPAIK LFGKTIPLTS NDETSAVSAI SGAPTAIAYA KDKLDEDRSS SAALQDEKSK  60
RAAAEQQRQQ KEKDPSGGKP TKPTGEDGGP PTSLKKLSDP ATSLEMIDEP QTASVEKEAA  120
TTKGCKTEEE QNETTTSIPQ EKTLKKPDKI LPCPRCNSMD TKFCYFNNYN VNQPRHFCKN  180
CQRYWTAGGT MRNVPVGAGR RKNKNSASHY RHITVSEALQ TTRTDAPDGV HHSALKPNGT  240
LLTFSSDSPL CESMASMLNL TEKTIRNCTR NGFNRAEEQR IPVSCGVENG DDRSSGCGSS  300
ITSSNCTEDG NRVSLQDPMM RNCNGFPPQI PCFPGTPWPY PWNSAQWSSA VPPPPAFCPS  360
SFPVSFYPTA TYWGCTLPAN WNIPWISPPS SSSSNGGSGS GPNSPLGKHS RDGSILKSNN  420
KEKADPSKES NSEKCLWIPK TLRIDDPGEA ARSSIWSTLG IKNNKADSIS AGGLFKVFQP  480
KSEEKNHTAG ASLVLQANPA ALSRSLNFHE TS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010257754.1	0.0	PREDICTED: cyclic dof factor 1-like
TrEMBL	A0A1U7ZVQ1	0.0	A0A1U7ZVQ1_NELNU; cyclic dof factor 1-like
STRING	XP_010257754.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-96	cycling DOF factor 2