PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_000783-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 283aa MW: 32287.1 Da PI: 6.1819 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.1 | 6.3e-18 | 80 | 133 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k NNU_000783-RA 80 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 133 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129.1 | 1.8e-41 | 79 | 169 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+++a+k++n++L++++++L++e+ NNU_000783-RA 79 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKADNDALQAQNKKLHAEI 169 69**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.71E-19 | 70 | 137 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.329 | 75 | 135 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-17 | 78 | 139 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.8E-15 | 80 | 133 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.72E-16 | 80 | 136 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-19 | 82 | 142 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.1E-5 | 106 | 115 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 110 | 133 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 115 | 131 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.1E-15 | 135 | 175 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0048826 | Biological Process | cotyledon morphogenesis | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MTCNGMAFFQ ANFMLQTPHE EDHHPPTSLN PILPSCTSQD FHGVASFLGK RSMSFSGIDM 60 CEETNGEEDL SDDGSQAGEK KRRLNMEQVK TLEKNFELGN KLEPERKMQL ARALGLQPRQ 120 IAIWFQNRRA RWKTKQLEKD YDLLKRQFEA IKADNDALQA QNKKLHAEIL ALKSREPTES 180 INLNKETEGS CSNRSENSSD INLDISRTPA IDSPLSSHHP SRPLFPSSIR PASVAQLLQN 240 SSRSDLQNQK MEQTVQDESF CNMFCGIDDQ PGFWSWPEQH HFH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 135 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00225 | DAP | Transfer from AT1G69780 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010256832.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-13-like | ||||
Swissprot | Q8LC03 | 1e-115 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A1U8A4W0 | 0.0 | A0A1U8A4W0_NELNU; homeobox-leucine zipper protein ATHB-13-like | ||||
STRING | XP_010256832.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-112 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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