PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_000760-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | Whirly | ||||||||
Protein Properties | Length: 231aa MW: 25911.6 Da PI: 9.3538 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 95.4 | 6.1e-30 | 84 | 152 | 1 | 69 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdla 69 s+yk+kaal+v++++p+f ldsg++kl+++G++ll++a+a+++r+ydW++kq+f+ls+te+++l++l+ NNU_000760-RA 84 SIYKGKAALTVEPKAPEFIPLDSGAFKLSKEGFVLLQFAPAVGVRQYDWSRKQVFSLSVTEIGTLINLG 152 7*****************************************************************997 PP | |||||||
2 | Whirly | 26.8 | 8.8e-09 | 146 | 181 | 104 | 139 |
Whirly 104 GlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 G+++nl v+n+l + +es+++P++kaef+vl+s+++ NNU_000760-RA 146 GTLINLGVQNKLSNIDESIYIPITKAEFTVLISAFN 181 789******************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 2.4E-34 | 73 | 152 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 4.63E-55 | 77 | 222 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.2E-26 | 85 | 151 | IPR013742 | Plant transcription factor |
Gene3D | G3DSA:2.30.31.10 | 6.2E-16 | 153 | 201 | IPR009044 | ssDNA-binding transcriptional regulator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042162 | Molecular Function | telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MHILSHRLPL QNPRCPLRFS EDSLRTSCFT SILPPVSAKT FKDLSVKCRR SEYFEQQRFT 60 RPSEDSSTSQ SPGALPPRVF VGHSIYKGKA ALTVEPKAPE FIPLDSGAFK LSKEGFVLLQ 120 FAPAVGVRQY DWSRKQVFSL SVTEIGTLIN LGVQNKLSNI DESIYIPITK AEFTVLISAF 180 NFILPYLIGW HAFADSTKPN DPGRVSNANL KYGADLEWSR YEQRPASPVE V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 2e-70 | 49 | 219 | 12 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 2e-70 | 49 | 219 | 12 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 2e-70 | 49 | 219 | 12 | 219 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 2e-70 | 49 | 219 | 12 | 219 | p24: plant transcriptional regulator PBF-2 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010256524.1 | 1e-153 | PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like | ||||
Swissprot | Q9M9S3 | 2e-84 | WHY1_ARATH; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A1U7ZWB6 | 1e-152 | A0A1U7ZWB6_NELNU; single-stranded DNA-binding protein WHY1, chloroplastic-like | ||||
STRING | XP_010256524.1 | 1e-153 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 8e-87 | ssDNA-binding transcriptional regulator |