PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_000597-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Dof
Protein Properties Length: 277aa    MW: 30162.4 Da    PI: 8.6602
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_000597-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1261.1e-393393262
         zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                   ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ss
  NNU_000597-RA 33 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSS 93
                   7899******************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-273085IPR003851Zinc finger, Dof-type
PfamPF027011.2E-333591IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.1993791IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103975IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MMEIGLVKPA AMEEVISNTC SRPMLERRTR PQKEQALNCP RCNSTNTKFC YYNNYSLTQP  60
RYFCKTCRRY WTEGGSLRNV PVGGGSRKNK RSSTSSASSS SKNLPDLTPP TCSASSQPNP  120
KIHKGQDLNL AFPAAQDFHA ISEFAELPNL QTTNNDTHNN PSSSSSTSTS SLSAFQLLRS  180
GITSRGLSSF TPIPIPDSNT VYPSGLALQD FKPTLSFSLD GLGGGYGNLH GVQESSGRLL  240
FPFEDLRQVS STTEFEQNRG QGDSTGYWNG MLGGGSW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252779.10.0PREDICTED: dof zinc finger protein DOF4.6-like isoform X1
SwissprotQ433852e-65DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A1U7ZI960.0A0A1U7ZI96_NELNU; dof zinc finger protein DOF4.6-like isoform X1
STRINGXP_010252779.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.44e-58Dof family protein