PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_000597-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | Dof | ||||||||
Protein Properties | Length: 277aa MW: 30162.4 Da PI: 8.6602 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126 | 1.1e-39 | 33 | 93 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ss NNU_000597-RA 33 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSS 93 7899******************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-27 | 30 | 85 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.2E-33 | 35 | 91 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.199 | 37 | 91 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 39 | 75 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009639 | Biological Process | response to red or far red light | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MMEIGLVKPA AMEEVISNTC SRPMLERRTR PQKEQALNCP RCNSTNTKFC YYNNYSLTQP 60 RYFCKTCRRY WTEGGSLRNV PVGGGSRKNK RSSTSSASSS SKNLPDLTPP TCSASSQPNP 120 KIHKGQDLNL AFPAAQDFHA ISEFAELPNL QTTNNDTHNN PSSSSSTSTS SLSAFQLLRS 180 GITSRGLSSF TPIPIPDSNT VYPSGLALQD FKPTLSFSLD GLGGGYGNLH GVQESSGRLL 240 FPFEDLRQVS STTEFEQNRG QGDSTGYWNG MLGGGSW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010252779.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.6-like isoform X1 | ||||
Swissprot | Q43385 | 2e-65 | DOF37_ARATH; Dof zinc finger protein DOF3.7 | ||||
TrEMBL | A0A1U7ZI96 | 0.0 | A0A1U7ZI96_NELNU; dof zinc finger protein DOF4.6-like isoform X1 | ||||
STRING | XP_010252779.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 4e-58 | Dof family protein |