PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_000552-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | NAC | ||||||||
Protein Properties | Length: 406aa MW: 46136.4 Da PI: 7.3147 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.5 | 1.8e-51 | 16 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi++vd++k+ePwd+++k++ +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk ++ NNU_000552-RA 16 VPPGFRFHPTEEELLHYYLRKKVAYEKIDL-DVIRDVDLNKLEPWDIQEKCRIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIY 110 69****************************.9***************964443122456************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s + + +g++ktLvfykgrap+g+k+dW+mheyrl NNU_000552-RA 111 S-SFRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 144 *.8889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-57 | 11 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.254 | 16 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-27 | 17 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MPGEEMSVSV NGQSRVPPGF RFHPTEEELL HYYLRKKVAY EKIDLDVIRD VDLNKLEPWD 60 IQEKCRIGST PQNDWYFFSH KDKKYPTGTR TNRATAAGFW KATGRDKVIY SSFRRIGMRK 120 TLVFYKGRAP HGQKSDWIMH EYRLDDHTID TNASGLMGET TQEEGWVVCR VFKKKNHHKC 180 LDSPKNSSVT VEENTQILKT SNDGSLDQIL QYMGRSCKQE TETNNNIRIN TSSSRNNNIR 240 IKPIQVSVNN GLHERSQQQL PALESPILPF LGKDSTRLDQ IQACTSQAGC YQPIDVQDLP 300 LITQSEPSVT NQGFSGWAAL DRLVASQLNG QSETCKQLSC FDNDSNMAFC SPPDHELQLP 360 QLRGSIHRSS SYHTSQDYNN EIDLWSFTRS CSSSSDPLCH VSNSST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-48 | 16 | 176 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00321 | DAP | Transfer from AT2G46770 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010251975.1 | 0.0 | PREDICTED: NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 1e-128 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A1U7ZSW9 | 0.0 | A0A1U7ZSW9_NELNU; NAC domain-containing protein 43-like | ||||
STRING | XP_010251975.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-119 | NAC family protein |