PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_000550-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

GRF

Protein Properties

Length: 581aa MW: 61707.6 Da PI: 6.7527

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_000550-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.7	5.8e-25	171	214	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e NNU_000550-RA 171 DPEPGRCRRTDGKKWRCSRDVAPDQKYCERHMHRGRPRSRKPVE 214 79***************************************987 PP
2	QLQ	57.7	3.5e-20	109	143	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FT +Q+q+L++Q+l+yKy++a++PvPp+Ll+ i+ NNU_000550-RA 109 PFTSTQWQELERQALIYKYMMASVPVPPDLLMTIS 143 8******************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.2E-12	108	144	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.377	109	144	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.0E-14	109	142	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.609	171	215	IPR014977	WRC domain
Pfam	PF08879	4.2E-21	172	214	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence Send to blast
MRTEISGEPV SDMAAAETAA GDGMRLKLQR TPSFPYKMTT AAPVAMAEVF GGGPTFYSGS 60 KEGARFTRAI YDSAVGGGGG AAAMTLQPFN TYTAFKSPGG GMAASLRFPF TSTQWQELER 120 QALIYKYMMA SVPVPPDLLM TISRNPSQPI ASQSTMGRGA CFNLRFSSST DPEPGRCRRT 180 DGKKWRCSRD VAPDQKYCER HMHRGRPRSR KPVELQAEGE DNNIASNNAP SATSTPATAC 240 LPTIATNTSN ISFHRLAAEK FDTQPSRVLV DPAYKVSPFE TNFPSLSYKQ PGCAEWTSKG 300 ETVSFTAFDQ QWQQQMNTKV AFRTDSNLCN ATVYRQHYKE ATNLNLHSHL GEGEGSEQQQ 360 TDNCCLLLNT GFVSLDGSSG SDRRQTPRGF IDAWSTAGSE NTTASRGKSP VSSNGILSLS 420 SSLTLSMSGG CGMGEEMDQV QRDLGVMGSE RDIGEGCQPS SWMNPVSWVS SPPGGPLGEV 480 LLPSGAATVT GASNGVCPES CSGGTTGKKS SYGGEDLNLM SDFWGVGSDP SSPPATTASS 540 PSGVLQKTLV SLSDSSGSSS PSFTAGVPKS EIAIQWSNQS K

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence Send to blast

MRTEISGEPV SDMAAAETAA GDGMRLKLQR TPSFPYKMTT AAPVAMAEVF GGGPTFYSGS  60
KEGARFTRAI YDSAVGGGGG AAAMTLQPFN TYTAFKSPGG GMAASLRFPF TSTQWQELER  120
QALIYKYMMA SVPVPPDLLM TISRNPSQPI ASQSTMGRGA CFNLRFSSST DPEPGRCRRT  180
DGKKWRCSRD VAPDQKYCER HMHRGRPRSR KPVELQAEGE DNNIASNNAP SATSTPATAC  240
LPTIATNTSN ISFHRLAAEK FDTQPSRVLV DPAYKVSPFE TNFPSLSYKQ PGCAEWTSKG  300
ETVSFTAFDQ QWQQQMNTKV AFRTDSNLCN ATVYRQHYKE ATNLNLHSHL GEGEGSEQQQ  360
TDNCCLLLNT GFVSLDGSSG SDRRQTPRGF IDAWSTAGSE NTTASRGKSP VSSNGILSLS  420
SSLTLSMSGG CGMGEEMDQV QRDLGVMGSE RDIGEGCQPS SWMNPVSWVS SPPGGPLGEV  480
LLPSGAATVT GASNGVCPES CSGGTTGKKS SYGGEDLNLM SDFWGVGSDP SSPPATTASS  540
PSGVLQKTLV SLSDSSGSSS PSFTAGVPKS EIAIQWSNQS K

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010251960.1	0.0	PREDICTED: growth-regulating factor 2
TrEMBL	A0A1U7ZSW5	0.0	A0A1U7ZSW5_NELNU; growth-regulating factor 2
STRING	XP_010251960.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	6e-39	growth-regulating factor 5