PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_000476-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Trihelix

Protein Properties

Length: 631aa MW: 69889.9 Da PI: 6.2261

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_000476-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.5	4e-14	1	51	35	87
trihelix 35 skkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 s+k++e g+ rs+k+Ckek+en++k+yk++keg+ +r++++s +++f+qlea NNU_000476-RA 1 SRKLAELGYVRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFSQLEA 51 7899******************************866665..*****85 PP
2	trihelix	108.5	4.4e-34	365	450	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+ +e+r++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf+ql+a NNU_000476-RA 365 RWPKAEVHALIKMRSGLESRYQEAGPKGPLWEEISAGMQRMGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHQLDA 450 8*******************************************************************8.99999******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.6E-9	1	52	No hit	No description
PROSITE profile	PS50090	6.946	364	422	IPR017877	Myb-like domain
Pfam	PF13837	8.4E-24	364	451	No hit	No description
CDD	cd12203	7.72E-30	364	429	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 631 aa Download sequence Send to blast
SRKLAELGYV RSAKKCKEKF ENVHKYYKRT KEGRAGRQDG KSYRFFSQLE ALHTNSSGSN 60 NIATSVMPAA TTTATTNPSS TAAPAPITMG GRNPMVGSTG RVQAPQVSAS PATDTTQIGV 120 PRVSPSDLGA AATASAAATT TGISFSSNTS SSSSDSEDDL EAGGPSNTDS RKRKRGSRGG 180 SSRMMSFFEG LMKQVMERQE AMQQRFLETI EKREQDRIIR EEAWRRQEMA RLTREHEIMA 240 QERAISSSRD AAIISFLQKI TGQTIQFPPP ISIPAAPPPQ PIITHPPPSQ HQHQQQQQQP 300 QPQPQPQQQQ QPPQPHHQHH QSQSAEIVRH QPASSEVIIA IPEQQVPQEM SSGGRGGSFD 360 PTSSRWPKAE VHALIKMRSG LESRYQEAGP KGPLWEEISA GMQRMGYNRS AKRCKEKWEN 420 INKYFKKVKE SNKKRPEDAK TCPYFHQLDA LYRKKILGSS SGSTSFGNQN RQEEQPQQLE 480 TMDPSPTTTN LPERGNALTI MSLPPSNQTS ETEDNKNNNN NNNNGGSTTE VQTSNGGLPP 540 GTAMKKPEDL VKELMEQQQK QQEQSVMDDY DKLEEPDSDN LDQEDDDDDD DDDDEDEEAE 600 EERKMAYKIQ FQNGGSANGG NAASTFMAMV Q

Sequence ? help Back to Top

Protein Sequence Length: 631 aa Download sequence Send to blast

SRKLAELGYV RSAKKCKEKF ENVHKYYKRT KEGRAGRQDG KSYRFFSQLE ALHTNSSGSN  60
NIATSVMPAA TTTATTNPSS TAAPAPITMG GRNPMVGSTG RVQAPQVSAS PATDTTQIGV  120
PRVSPSDLGA AATASAAATT TGISFSSNTS SSSSDSEDDL EAGGPSNTDS RKRKRGSRGG  180
SSRMMSFFEG LMKQVMERQE AMQQRFLETI EKREQDRIIR EEAWRRQEMA RLTREHEIMA  240
QERAISSSRD AAIISFLQKI TGQTIQFPPP ISIPAAPPPQ PIITHPPPSQ HQHQQQQQQP  300
QPQPQPQQQQ QPPQPHHQHH QSQSAEIVRH QPASSEVIIA IPEQQVPQEM SSGGRGGSFD  360
PTSSRWPKAE VHALIKMRSG LESRYQEAGP KGPLWEEISA GMQRMGYNRS AKRCKEKWEN  420
INKYFKKVKE SNKKRPEDAK TCPYFHQLDA LYRKKILGSS SGSTSFGNQN RQEEQPQQLE  480
TMDPSPTTTN LPERGNALTI MSLPPSNQTS ETEDNKNNNN NNNNGGSTTE VQTSNGGLPP  540
GTAMKKPEDL VKELMEQQQK QQEQSVMDDY DKLEEPDSDN LDQEDDDDDD DDDDEDEEAE  600
EERKMAYKIQ FQNGGSANGG NAASTFMAMV Q

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010250883.1	0.0	PREDICTED: trihelix transcription factor GTL1 isoform X1
TrEMBL	A0A1U7ZRP6	0.0	A0A1U7ZRP6_NELNU; trihelix transcription factor GTL1 isoform X1
STRING	XP_010250883.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	5e-50	Trihelix family protein