PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | NNU_000404-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 255aa MW: 26423.7 Da PI: 10.1439 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.1 | 6.3e-38 | 31 | 111 | 2 | 83 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ a+s s+ +s NNU_000404-RA 31 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-AVSVSVRGS 111 789******************************************************************777.222222222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.9E-33 | 37 | 125 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.892 | 37 | 91 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
MSTTDGATNG ATNGALMDPQ RQQPPGNGAL AVKKPPAKDR HSKVDGRGRR IRMPIICAAR 60 VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSAVSVSVRG SSGTSVSASL 120 DQKPTPPMLG PTPFILGKRL RTDDDADDGA KDDATAAAAA VAVGPTGGFW ALPARPDFGQ 180 VWSFAATPEM VVPTPAAVAV ASQQSMTGRF PQQPIGEASA ARVGNYLPIA QGHLNLLASL 240 SGAPASSVRR DDEHR |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010249637.1 | 0.0 | PREDICTED: transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 2e-91 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A1U7Z8A1 | 0.0 | A0A1U7Z8A1_NELNU; transcription factor TCP7 | ||||
STRING | XP_010249637.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G23280.1 | 6e-54 | TCP family protein |