PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_000302-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 706aa MW: 77939.2 Da PI: 6.6942 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.7 | 2.6e-20 | 23 | 78 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t++q+++Le++F+ +++p++++r +L+++lgL+ rq+k+WFqNrR+++k NNU_000302-RA 23 RKRYHRHTAQQIQRLEAVFKDCPHPDEKKRLQLSRELGLEPRQIKFWFQNRRTQMK 78 789999***********************************************998 PP | |||||||
2 | START | 164 | 1.1e-51 | 219 | 442 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 la +a++e +++ + +ep+W ks ++g +v+ ++ ++ s+e++rasgvv+m+ lv + + + +W e ++ +a + NNU_000302-RA 219 LAASAMAEIIRLLQTDEPLWRKST--NDGRDVINHESYERLfpracslrnpdTSIEMSRASGVVIMNGLALVDMFTNLN-KWVECFPtvvsRARQI 311 67899*******************..666666666665555677779****99****************9**9999999.99999999999***** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171 ev+s+g g lql++aelq+lsplvp R+++fvRy++q ++g w++vdvS d +++++ s +++lpSg+li++ +ng+skv w+ehv+ NNU_000302-RA 312 EVLSPGmegshsGSLQLIYAELQVLSPLVPtREVYFVRYCQQIEQGMWAVVDVSFDITRENQ-LVSPLQCRRLPSGCLIQEIPNGYSKVSWLEHVE 406 *************************************************************9.7999999************************** PP --SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 172 lkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 l++r+p + l+r +v+sg+a ga +w+atlqr ce+ NNU_000302-RA 407 LEDRVPtPRLYRDFVSSGMAYGAERWLATLQRMCER 442 ******999*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-22 | 8 | 74 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.85E-20 | 10 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.799 | 20 | 80 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-19 | 21 | 84 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.65E-18 | 23 | 80 | No hit | No description |
Pfam | PF00046 | 5.8E-18 | 23 | 78 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 55 | 78 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 48.592 | 209 | 445 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.4E-35 | 210 | 443 | No hit | No description |
CDD | cd08875 | 1.12E-108 | 213 | 441 | No hit | No description |
SMART | SM00234 | 3.9E-42 | 218 | 442 | IPR002913 | START domain |
Pfam | PF01852 | 5.1E-45 | 219 | 442 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.2E-6 | 220 | 440 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 7.85E-20 | 465 | 698 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 706 aa Download sequence Send to blast |
MEAGVGGGGS GDDRDIPDPH DKRKRYHRHT AQQIQRLEAV FKDCPHPDEK KRLQLSRELG 60 LEPRQIKFWF QNRRTQMKAQ LERSDNNALR QDNDRIRSEN IAIREALKNV ICPTCGGPPG 120 GEYFDEEKLR LENARLREEL ERITSITARY TGRPISQLPP VPPISVSSLD LSVGSLGGQG 180 MGGHALDLDL LASSSSSDPQ LPFQTTAISE MEKAVMADLA ASAMAEIIRL LQTDEPLWRK 240 STNDGRDVIN HESYERLFPR ACSLRNPDTS IEMSRASGVV IMNGLALVDM FTNLNKWVEC 300 FPTVVSRARQ IEVLSPGMEG SHSGSLQLIY AELQVLSPLV PTREVYFVRY CQQIEQGMWA 360 VVDVSFDITR ENQLVSPLQC RRLPSGCLIQ EIPNGYSKVS WLEHVELEDR VPTPRLYRDF 420 VSSGMAYGAE RWLATLQRMC ERFACQMVSG ASSRDLGGVI PSVDGRRSMM RLAQRMVNSF 480 CANISASSGR WTTLSGLGDS GVRVIAHKST EPGQPTGVIL SAATSIWVPV PWQNVFNFIR 540 DERNRAQWDL LSHGNSVQEV AHIANGSHPG NCISVLRTLN ASQNNMLLLQ ESCIDSSESL 600 VVYSPVDLPA INIAMSGEDT SYINILPSGF AIYSDGRRDQ AAEGASSSSL QGNTSRSSGS 660 LITVAYQILV SSLPTARVTV DTVSTVNNVI SNTIHRIKAA LNCPRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010244355.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ROC8-like isoform X1 | ||||
Swissprot | Q69T58 | 0.0 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | A0A1U7Z9H6 | 0.0 | A0A1U7Z9H6_NELNU; homeobox-leucine zipper protein ROC8-like isoform X1 | ||||
STRING | XP_010244355.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |