PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_000302-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 706aa    MW: 77939.2 Da    PI: 6.6942
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_000302-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.6e-202378156
                   TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   r++ +++t++q+++Le++F+ +++p++++r +L+++lgL+ rq+k+WFqNrR+++k
  NNU_000302-RA 23 RKRYHRHTAQQIQRLEAVFKDCPHPDEKKRLQLSRELGLEPRQIKFWFQNRRTQMK 78
                   789999***********************************************998 PP

2START1641.1e-512194422206
                    HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                    la +a++e +++ + +ep+W ks   ++g +v+  ++ ++             s+e++rasgvv+m+   lv  + + + +W e ++    +a  +
  NNU_000302-RA 219 LAASAMAEIIRLLQTDEPLWRKST--NDGRDVINHESYERLfpracslrnpdTSIEMSRASGVVIMNGLALVDMFTNLN-KWVECFPtvvsRARQI 311
                    67899*******************..666666666665555677779****99****************9**9999999.99999999999***** PP

                    EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
          START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                    ev+s+g      g lql++aelq+lsplvp R+++fvRy++q ++g w++vdvS d +++++   s   +++lpSg+li++ +ng+skv w+ehv+
  NNU_000302-RA 312 EVLSPGmegshsGSLQLIYAELQVLSPLVPtREVYFVRYCQQIEQGMWAVVDVSFDITRENQ-LVSPLQCRRLPSGCLIQEIPNGYSKVSWLEHVE 406
                    *************************************************************9.7999999************************** PP

                    --SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 172 lkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                    l++r+p + l+r +v+sg+a ga +w+atlqr ce+
  NNU_000302-RA 407 LEDRVPtPRLYRDFVSSGMAYGAERWLATLQRMCER 442
                    ******999*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-22874IPR009057Homeodomain-like
SuperFamilySSF466895.85E-201079IPR009057Homeodomain-like
PROSITE profilePS5007117.7992080IPR001356Homeobox domain
SMARTSM003895.3E-192184IPR001356Homeobox domain
CDDcd000863.65E-182380No hitNo description
PfamPF000465.8E-182378IPR001356Homeobox domain
PROSITE patternPS0002705578IPR017970Homeobox, conserved site
PROSITE profilePS5084848.592209445IPR002913START domain
SuperFamilySSF559611.4E-35210443No hitNo description
CDDcd088751.12E-108213441No hitNo description
SMARTSM002343.9E-42218442IPR002913START domain
PfamPF018525.1E-45219442IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-6220440IPR023393START-like domain
SuperFamilySSF559617.85E-20465698No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MEAGVGGGGS GDDRDIPDPH DKRKRYHRHT AQQIQRLEAV FKDCPHPDEK KRLQLSRELG  60
LEPRQIKFWF QNRRTQMKAQ LERSDNNALR QDNDRIRSEN IAIREALKNV ICPTCGGPPG  120
GEYFDEEKLR LENARLREEL ERITSITARY TGRPISQLPP VPPISVSSLD LSVGSLGGQG  180
MGGHALDLDL LASSSSSDPQ LPFQTTAISE MEKAVMADLA ASAMAEIIRL LQTDEPLWRK  240
STNDGRDVIN HESYERLFPR ACSLRNPDTS IEMSRASGVV IMNGLALVDM FTNLNKWVEC  300
FPTVVSRARQ IEVLSPGMEG SHSGSLQLIY AELQVLSPLV PTREVYFVRY CQQIEQGMWA  360
VVDVSFDITR ENQLVSPLQC RRLPSGCLIQ EIPNGYSKVS WLEHVELEDR VPTPRLYRDF  420
VSSGMAYGAE RWLATLQRMC ERFACQMVSG ASSRDLGGVI PSVDGRRSMM RLAQRMVNSF  480
CANISASSGR WTTLSGLGDS GVRVIAHKST EPGQPTGVIL SAATSIWVPV PWQNVFNFIR  540
DERNRAQWDL LSHGNSVQEV AHIANGSHPG NCISVLRTLN ASQNNMLLLQ ESCIDSSESL  600
VVYSPVDLPA INIAMSGEDT SYINILPSGF AIYSDGRRDQ AAEGASSSSL QGNTSRSSGS  660
LITVAYQILV SSLPTARVTV DTVSTVNNVI SNTIHRIKAA LNCPRS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010244355.10.0PREDICTED: homeobox-leucine zipper protein ROC8-like isoform X1
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A1U7Z9H60.0A0A1U7Z9H6_NELNU; homeobox-leucine zipper protein ROC8-like isoform X1
STRINGXP_010244355.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11