PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_000239-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ARR-B
Protein Properties Length: 552aa    MW: 59803.4 Da    PI: 6.509
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_000239-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.92.3e-28223276155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  NNU_000239-RA 223 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 276
                    79*******************.********************************8 PP
2Response_reg78.32.7e-26381461109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                    vl+vdD+ + +++l+q+l+k  y +v+++ +++ al+ll+ek+  +D+++ D+ mp+mdG++ll++   e  +lp+i+++a g  + + + +k Ga
  NNU_000239-RA  38 VLVVDDDTTCLKILEQMLRKCLY-HVTTCCQATVALNLLREKKgcFDVVISDVHMPDMDGYKLLEHVGLEM-DLPVIMMSADGRTSAVMRGIKHGA 131
                    89*********************.*******************************************6644.8*********************** PP

                    SEEEESS--HHHHHH CS
   Response_reg  95 kdflsKpfdpeelvk 109
                     d+l Kp+  eel +
  NNU_000239-RA 132 CDYLIKPVRVEELKN 146
                    ************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521727.97E-3635164IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.2E-4235170No hitNo description
SMARTSM004487.2E-3036148IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.18637152IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2338146IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.33E-2639151No hitNo description
SuperFamilySSF466891.08E-19220280IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-30220281IPR009057Homeodomain-like
PROSITE profilePS5129411.209220279IPR017930Myb domain
TIGRFAMsTIGR015571.9E-24223276IPR006447Myb domain, plants
PfamPF002497.5E-7225274IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MATVQKLSVS SGSTNGGSYG SFKTDAVVSD QFPAGLRVLV VDDDTTCLKI LEQMLRKCLY  60
HVTTCCQATV ALNLLREKKG CFDVVISDVH MPDMDGYKLL EHVGLEMDLP VIMMSADGRT  120
SAVMRGIKHG ACDYLIKPVR VEELKNIWQH VVRKRWNENK EHEQSGSMED NDRHKRGSDD  180
AEYTSSVNEG TDGNSKSQKK RKDTKEDEDD GEMENEDPST SKKPRVVWSV ELHQQFVSAV  240
NQLGIDKAVP KRILELMNVP GLTRENVASH LQKFRLYLKR LSGVAQQQGG IPSSFCGPVE  300
SNAKMGSLGR LDIQALAASG QIPPQTLAAL HAELLGRPTS NLVLPAIDQP VLLQASLHVS  360
KCLPVERGNT TVSLNRNSSF STGTVIDYSL HSGQTNNGSS SIGQVPDGDL KNIGVLNGYA  420
VPSSISPTVS SCSIQPDNSS WHVQNSAINF SVANRLPELV SNSCEIQGSY VTRPAALPDQ  480
GPGRNLGFVG KGTSIPSRFA VDDLEPPMCN MNQVKTFGDS NGGIVKQEAD LDYMENAKPG  540
TGSARQVHNG MA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-23219282164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274996.10.0PREDICTED: two-component response regulator ORR21-like
RefseqXP_010275062.10.0PREDICTED: two-component response regulator ORR21-like
SwissprotA2XE311e-151ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-151ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A1U8BF560.0A0A1U8BF56_NELNU; two-component response regulator ORR21-like
STRINGXP_010274996.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-125response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]