PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_000153-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 221aa MW: 25223.9 Da PI: 9.9195 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.9 | 4.2e-17 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++++++G g W++++ + g++R++k+c++rw++yl NNU_000153-RA 9 KGSWTEEEDILLRECIEKYGEGKWHRVPVRAGLKRCRKSCRLRWLNYL 56 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 42.7 | 1.3e-13 | 62 | 105 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T++E +l+ +++k+lG++ W++Ia +++ gRt++++k++ ++ NNU_000153-RA 62 RGQFTADEVDLITRLHKLLGNR-WSLIAGRLP-GRTANDIKNYCNT 105 899*******************.*********.**********886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-23 | 4 | 59 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.335 | 4 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.07E-28 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-14 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-16 | 9 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.33E-11 | 11 | 56 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-21 | 60 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-12 | 61 | 109 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.05 | 61 | 111 | IPR017930 | Myb domain |
Pfam | PF00249 | 6.7E-12 | 62 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.19E-9 | 65 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MLSNPGLRKG SWTEEEDILL RECIEKYGEG KWHRVPVRAG LKRCRKSCRL RWLNYLKPDI 60 KRGQFTADEV DLITRLHKLL GNRWSLIAGR LPGRTANDIK NYCNTRMRKN KVSPRKEKET 120 TDDKIVTQKT KVFRPRPLNF CKNSPCFLRR MADSTSVGAV SHPQTGEEMP SNNNNNNNNE 180 VFLSLDLPPP TDEALPWWKS ILAGCENEIV GDNGISCSIS G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-24 | 4 | 109 | 22 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00213 | DAP | Transfer from AT1G66370 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010253283.1 | 1e-163 | PREDICTED: transcription factor MYB114-like | ||||
Swissprot | Q9FNV9 | 6e-61 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A1U7ZHH6 | 1e-161 | A0A1U7ZHH6_NELNU; transcription factor MYB114-like | ||||
STRING | XP_010253283.1 | 1e-162 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 2e-63 | myb domain protein 113 |
Publications ? help Back to Top | |||
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