PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_000139-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB

Protein Properties

Length: 345aa MW: 39303.2 Da PI: 6.7035

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_000139-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.8	1.9e-16	14	60	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W+ +Ed+ll+++++ +G g+W+ +++ g++R++k+c++rw +y NNU_000139-RA 14 RGAWSVDEDLLLLNYIQIHGEGRWRELPQRAGLNRCGKSCRLRWMNY 60 89********************************************9 PP
2	Myb_DNA-binding	51.3	2.6e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eEd+l+++ +k+ G++ W++Ia +++ gRt++++k++w+++l NNU_000139-RA 67 RGNFSMEEDDLIIKMHKLIGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 112 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-22	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.553	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	8.2E-30	12	108	IPR009057	Homeodomain-like
SMART	SM00717	6.6E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.5E-15	14	60	IPR001005	SANT/Myb domain
CDD	cd00167	2.05E-10	16	61	No hit	No description
PROSITE profile	PS51294	24.848	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-25	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-14	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-14	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	5.23E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MVRKQCCVKE QVKRGAWSVD EDLLLLNYIQ IHGEGRWREL PQRAGLNRCG KSCRLRWMNY 60 VKPGIKRGNF SMEEDDLIIK MHKLIGNRWS LIAGRLPGRT DNEIKNYWNS HLIKKLQAEQ 120 QKRLVESKEK KPMKNSYIVQ PEAKRRCIQV FLPQQEGKEG NEKIQIIGGT TRDFNKPSSS 180 SSQNVDGPSD LLMDFNVDDL LISDISSSNF LHVHGDRNQQ IKDVSDGDDV RNNLSSHSIF 240 DHSSQKVDDP SDLIMDFTVD DLPISDISSS NLLHVHRGDK IQHITDATYG DGVRNNFSSG 300 SSTFGYSLSS HDILHEGLTN ETMVQDLYHP LQSDEVLNSI GWPLF

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MVRKQCCVKE QVKRGAWSVD EDLLLLNYIQ IHGEGRWREL PQRAGLNRCG KSCRLRWMNY  60
VKPGIKRGNF SMEEDDLIIK MHKLIGNRWS LIAGRLPGRT DNEIKNYWNS HLIKKLQAEQ  120
QKRLVESKEK KPMKNSYIVQ PEAKRRCIQV FLPQQEGKEG NEKIQIIGGT TRDFNKPSSS  180
SSQNVDGPSD LLMDFNVDDL LISDISSSNF LHVHGDRNQQ IKDVSDGDDV RNNLSSHSIF  240
DHSSQKVDDP SDLIMDFTVD DLPISDISSS NLLHVHRGDK IQHITDATYG DGVRNNFSSG  300
SSTFGYSLSS HDILHEGLTN ETMVQDLYHP LQSDEVLNSI GWPLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-24	3	116	16	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019053911.1	0.0	PREDICTED: transcription repressor MYB5-like
TrEMBL	A0A1U8Q7A1	0.0	A0A1U8Q7A1_NELNU; transcription repressor MYB5-like
STRING	XP_010274708.1	2e-78	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	4e-57	myb domain protein 5