PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_000027-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | NF-YC | ||||||||
Protein Properties | Length: 146aa MW: 16450.5 Da PI: 4.4685 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 102.4 | 3.1e-32 | 1 | 72 | 30 | 101 |
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101 +k+de+vk+isa+aP+l+skacelfileltlrswlh+ee+ rrtl+++dia ++t + dfl+ ++p +e+ NNU_000027-RA 1 MKSDEEVKKISADAPILFSKACELFILELTLRSWLHTEEQGRRTLQRCDIAHSITTESVLDFLLGVIPVEET 72 9*******************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.3E-23 | 1 | 68 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.1E-13 | 1 | 53 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 4.36E-19 | 1 | 68 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MKSDEEVKKI SADAPILFSK ACELFILELT LRSWLHTEEQ GRRTLQRCDI AHSITTESVL 60 DFLLGVIPVE ETKEEQAEKD ESLTVSDLPS NEKFKAGEQV PQRLMIQHPE SSTRIVYESP 120 AESRDIKNGE KQGEAIDLCY GSKDGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 7e-27 | 1 | 68 | 27 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010252990.1 | 1e-98 | PREDICTED: nuclear transcription factor Y subunit C-4-like | ||||
Swissprot | Q9FMV5 | 2e-31 | NFYC4_ARATH; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A0A1U7ZMR7 | 3e-97 | A0A1U7ZMR7_NELNU; nuclear transcription factor Y subunit C-4-like | ||||
STRING | XP_010252990.1 | 5e-98 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 1e-29 | nuclear factor Y, subunit C1 |