PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf36738g00016.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 324aa MW: 35843.8 Da PI: 6.9463

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf36738g00016.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.3	2.6e-11	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+ l+ +v ++G g W+tI + R+ ++k++w+++ Niben101Scf36738g00016.1 5 KQKWTSEEEASLKAGVSKYGVGKWSTILKDPEfaavlRSRSNVDLKDKWRNL 56 79************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.84	1	63	IPR017930	Myb domain
SuperFamily	SSF46689	1.56E-15	2	58	IPR009057	Homeodomain-like
SMART	SM00717	4.7E-7	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-14	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	9.0E-8	5	56	IPR001005	SANT/Myb domain
CDD	cd11660	8.71E-21	6	56	No hit	No description
SMART	SM00526	3.8E-8	150	213	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	19.274	150	218	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	2.01E-13	153	223	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.2E-13	154	218	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	1.8E-8	155	211	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MGAPKQKWTS EEEASLKAGV SKYGVGKWST ILKDPEFAAV LRSRSNVDLK DKWRNLHVMA 60 NGLGSRHQVS RHQGRVVSKS VQPKQRRDDN SLLVSTMVEN DIEVLDPKPL ASSGDALDDV 120 GCKKTICRLD DLILEAXNIM MYQTCVCFFI DYRLDDLILE AIAKLKEPHG SRRNAILSYI 180 EEWHTAPPNF ERLLAANLKA LTDKGRLIKV RHQYRIAPGR LSPGTKGGHL PFLMDGKEDS 240 TMIEKNEIRI QTKAQVDVEL EQMKSMTAGE AAAAAAQAVA DAEAAIAEAE RAARIAEAAE 300 AEAEAKQCFH EVTLKALQDQ TIPV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009587559.1	1e-173	PREDICTED: single myb histone 5-like isoform X2
Refseq	XP_009587560.1	1e-173	PREDICTED: single myb histone 5-like isoform X2
Refseq	XP_009587561.1	1e-173	PREDICTED: single myb histone 5-like isoform X2
Refseq	XP_009587562.1	1e-173	PREDICTED: single myb histone 5-like isoform X2
Refseq	XP_016480326.1	1e-173	PREDICTED: single myb histone 5-like isoform X1
Refseq	XP_016480327.1	1e-173	PREDICTED: single myb histone 5-like isoform X1
Refseq	XP_016480328.1	1e-173	PREDICTED: single myb histone 5-like isoform X1
Refseq	XP_016480329.1	1e-173	PREDICTED: single myb histone 5-like isoform X1
Refseq	XP_016480330.1	1e-173	PREDICTED: single myb histone 5-like isoform X1
Refseq	XP_018622557.1	1e-173	PREDICTED: single myb histone 5-like isoform X2
TrEMBL	A0A1S4AUH2	1e-172	A0A1S4AUH2_TOBAC; single myb histone 5-like isoform X1
STRING	XP_009786348.1	1e-169	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5122	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	1e-58	telomere repeat binding factor 1