PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf35850g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 330aa    MW: 37890.5 Da    PI: 6.6734
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf35850g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94e-175296147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                              rgr+T+eE++l++ ++   G++ W+ Ia++++ gRt++++k++w+++
  Niben101Scf35850g00003.1 52 RGRFTPEEEKLIISLHGTVGNR-WAHIASHLP-GRTDNEIKNYWNSW 96
                              89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.147146IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.6E-111753IPR009057Homeodomain-like
SuperFamilySSF466892.69E-2232106IPR009057Homeodomain-like
PROSITE profilePS5129425.20247101IPR017930Myb domain
SMARTSM007177.5E-175199IPR001005SANT/Myb domain
PfamPF002496.2E-165296IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-2654102IPR009057Homeodomain-like
CDDcd001673.01E-125497No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MISKLTYVTY ARKKKKKKIA TEQGGMAEVR LQRCGKSCRL RWINYLRPDI RRGRFTPEEE  60
KLIISLHGTV GNRWAHIASH LPGRTDNEIK NYWNSWIKKK LKKSSKPSTD NTNSITDQQQ  120
QQRSQLAYNT ITTNPPEIFL THEDIGITKS QVLQDTALLI NSPNQLFFFD KGSLDIMTNV  180
NDATIRGTNN TSLFQEISVL NSEFWQVDQQ QHQVQISYTT GMDSDYLPPL IETMVSPMEI  240
PSSKYNNNMM VEGQDNNQVN EEWSSTCSRI TRTNGEMVQS NEEWSQIDTQ QCCPSYLFWD  300
QEIRSLGGDE IIDTNTSNNL GQILSSFPSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-211710123108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11117RKKKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793072.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLA0A1U7XM010.0A0A1U7XM01_NICSY; transcription repressor MYB6-like
STRINGXP_009793072.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA124391722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.13e-43myb domain protein 103