PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf34895g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 205aa MW: 23586.4 Da PI: 6.2658 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1.1e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ +v+++G +W+ +++ g+ R++k+c++rw +yl Niben101Scf34895g00004.1 14 KGTWTPEEDRKLAAYVTKYGCWNWRQLPKYAGLARCGKSCRLRWMNYL 61 799*****************99************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.5E-22 | 7 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.38 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.58E-22 | 15 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.05E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS50090 | 5.471 | 62 | 125 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-9 | 65 | 87 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4 | 66 | 127 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MVRTPSYDQN GKKKGTWTPE EDRKLAAYVT KYGCWNWRQL PKYAGLARCG KSCRLRWMNY 60 LRPNIKRGNY TKEEDDIILK LHAQLGNSDC ESKSINQASG TSRKIVENQN AVSRNNCMRS 120 YEIVLESSQW STKQSSSEEH QAFQEEAILM DNSGSFCTEP FLVDTSFSSK TDYTFPSIDW 180 ELICPPSPLI GHEFLSSFDL EDYNC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-15 | 14 | 91 | 7 | 83 | B-MYB |
1h8a_C | 2e-15 | 14 | 91 | 27 | 103 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019238731.1 | 1e-136 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A1J6KFD9 | 1e-134 | A0A1J6KFD9_NICAT; Myb-related protein myb4 | ||||
STRING | XP_009624516.1 | 1e-121 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60890.1 | 2e-36 | myb domain protein 34 |