PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf32603g00010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 342aa    MW: 37628.3 Da    PI: 7.3686
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf32603g00010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.2e-09170217455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h+ +Er RR++iN ++  L+el+P +    +k    a++L + +++++ Lq
  Niben101Scf32603g00010.1 170 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQFLQ 217
                               8*************************9....89999*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-15164234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-9164221No hitNo description
PROSITE profilePS5088814.64166216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-15166231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-7170217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-9172222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGEMATGSSF TALLELPANQ AVELLVHSLE TDKTGEPHIP HYRYLPPPPP PPPIFPSDAA  60
LIDRASKFSV FAAAAGISPE SNSTLSNSGS KSLLVKQEPP DSEFNQNSSP ITVSNPTVNQ  120
KTTKRKEREK KVKETSTKKG KKSTNNTSED DAEKIPYVHV RARRGQATDS HSLAERARRE  180
KINARMKLLQ ELVPGCNKIS GTAMVLDEII NHVQFLQRQV EFLSMRLAAV NPSVDFNLDN  240
LFAPERSGSH VESNLPDMIV PPIWADGQTS GNRNQYQHLW HLEGFHQPVW GRVEDNSSFI  300
TPENSLLTCD SSANSGKSQL NGLILTPKSA ENGAMKAEAR IY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795428.10.0PREDICTED: transcription factor bHLH48-like isoform X1
TrEMBLA0A1U7XWW10.0A0A1U7XWW1_NICSY; transcription factor bHLH48-like isoform X1
STRINGXP_009795428.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40292342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-64bHLH family protein