PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf31568g00007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 282aa MW: 32220.7 Da PI: 7.3142

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf31568g00007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	25	4.1e-08	17	35	37	55
G2-like 37 kvkgLtlehvkSHLQkYRl 55 kv+ Lt++hvkSHLQ+YR+ Niben101Scf31568g00007.1 17 KVPRLTISHVKSHLQMYRS 35 6889**************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-7	17	38	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MGNCGRNGGV RQYIRSKVPR LTISHVKSHL QMYRSMKSEV NRQDRNSTQQ RKQSLENHDC 60 HQQEEGCVEQ QKLLVYHPSF SPIQRSDSPP YFNSVQPTKR ARIEPTNCSQ RIREAVANQY 120 SKDDYIHSMA DKSVVKEGEN GFIWQQICGE SETEREIETA HPALCNSTHF SLPQDFFQSF 180 NPQVQESEIF KAAKQQDSKW KSSKKCKFEG SRKIENAREE EEKEDDGCRL SLSLSLHHPS 240 IQRSNTSSII SEISEAISSF SGSNLNHHSV VNLDLSIALC SE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009766441.1	1e-165	PREDICTED: putative Myb family transcription factor At1g14600 isoform X2
TrEMBL	A0A1U7VNA7	1e-163	A0A1U7VNA7_NICSY; putative Myb family transcription factor At1g14600 isoform X2
STRING	XP_009766440.1	1e-162	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5433	22	38