PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf31499g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 295aa    MW: 32883.1 Da    PI: 8.3789
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf31499g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.66e-13644847
                              HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                              E  +++++vk++G+++W+ I++ ++ gR++k+c++rw + 
  Niben101Scf31499g00002.1  6 ETGRIKRLVKEHGPRNWSIISKSIP-GRSGKSCRLRWCNQ 44
                              666899*******************.***********985 PP
2Myb_DNA-binding50.64.5e-1692134347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               ++T+eEde +++a++++G++ W+tIa     gRt++++k++w++ 
  Niben101Scf31499g00002.1  92 PFTAEEDETILKAHAKFGNK-WATIACLSS-GRTDNSIKNHWNST 134
                               89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.963149IPR017930Myb domain
SuperFamilySSF466892.39E-16370IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-19552IPR009057Homeodomain-like
SMARTSM007171.4E-4547IPR001005SANT/Myb domain
PfamPF002494.9E-12644IPR001005SANT/Myb domain
CDDcd001673.65E-101043No hitNo description
PROSITE profilePS500904.8554684IPR017877Myb-like domain
SMARTSM007170.0125086IPR001005SANT/Myb domain
CDDcd001671.48E-55382No hitNo description
Gene3DG3DSA:1.10.10.601.7E-75383IPR009057Homeodomain-like
SuperFamilySSF466891.73E-2170140IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-2284138IPR009057Homeodomain-like
PROSITE profilePS5129422.64785139IPR017930Myb domain
SMARTSM007171.7E-1289137IPR001005SANT/Myb domain
CDDcd001674.59E-1092135No hitNo description
PfamPF002494.5E-1392134IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDTIKETGRI KRLVKEHGPR NWSIISKSIP GRSGKSCRLR WCNQLSPQVE HRPFTAEEDE  60
TILKAHAKFG RSGKSCRLRW CNQLSPQVEH RPFTAEEDET ILKAHAKFGN KWATIACLSS  120
GRTDNSIKNH WNSTLKRKCP STSDDFAFET PQRQLKRRSS SIGPGTISMN PGSSSESDLS  180
DSGFPGFPQS NVYRAVTRPG EILPPSVPDP PTSLSLSLPD PDSEKLRVAE PAPALEPALS  240
SPPGLMPQDL TVTENYSFGP SIMEKQLFSP EFFAVLQDMI HKEVKNYMSG FEDKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-36313910159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-36313910159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019257256.11e-142PREDICTED: transcription factor MYB44-like
TrEMBLA0A1J6IEI31e-140A0A1J6IEI3_NICAT; Transcription factor myb44
STRINGXP_009587267.11e-127(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15862471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.16e-49myb domain protein r1