PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf30199g00012.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 345aa MW: 39080.9 Da PI: 5.0866

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf30199g00012.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.4	2.8e-09	281	328	6	53
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +++k qle+Le+++++++ p+ +++ + + +L+ ++V WF rR Niben101Scf30199g00012.1 281 RIKKVQLETLEQVYRRSKRPTNAMISSIVHVSNLPRKRVLKWFEDRRS 328 68899******************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.718	273	333	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.81E-9	275	333	IPR009057	Homeodomain-like
CDD	cd00086	2.59E-6	276	327	No hit	No description
SMART	SM00389	4.4E-4	279	337	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.8E-8	281	335	IPR009057	Homeodomain-like
Pfam	PF00046	8.0E-7	281	328	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MASASTTLRI SITLRCSTND HHLLVGQPRN RSNVVLPLHS SSSRPSSSVL SFSRRRSNSA 60 NSAITSSKKK KKSSPKKDTE EDGDIDEDAF EALFQLLEED LKNDDLSLND DDISEEDLAK 120 LERELEEALK DDELLGEIAS IANEKIESED EDEEVVADDD NEDDKDEELP VKLKNWQLKK 180 LGYALRKGRR KTNVSCHLNI KTLAAELCLD RAVVLELLRN PPPNLLLLSD ALPDEPVPRM 240 IEPESKPQET VPIEISDVAR PEAKVETPVH VMQSSWSAQK RIKKVQLETL EQVYRRSKRP 300 TNAMISSIVH VSNLPRKRVL KWFEDRRSEE GVPDHRRPYQ APSKS

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MASASTTLRI SITLRCSTND HHLLVGQPRN RSNVVLPLHS SSSRPSSSVL SFSRRRSNSA  60
NSAITSSKKK KKSSPKKDTE EDGDIDEDAF EALFQLLEED LKNDDLSLND DDISEEDLAK  120
LERELEEALK DDELLGEIAS IANEKIESED EDEEVVADDD NEDDKDEELP VKLKNWQLKK  180
LGYALRKGRR KTNVSCHLNI KTLAAELCLD RAVVLELLRN PPPNLLLLSD ALPDEPVPRM  240
IEPESKPQET VPIEISDVAR PEAKVETPVH VMQSSWSAQK RIKKVQLETL EQVYRRSKRP  300
TNAMISSIVH VSNLPRKRVL KWFEDRRSEE GVPDHRRPYQ APSKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	71	RRRSNSANSAITSSKKKKK
2	67	76	KKKKKSSPKK

Functional Description ? help Back to Top
Source	Description
UniProt	May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250\|UniProtKB:Q70Z19, ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769, ECO:0000269\|PubMed:20836879, ECO:0000269\|PubMed:21564353}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016452263.1	0.0	PREDICTED: protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3-like isoform X1
Refseq	XP_016452264.1	0.0	PREDICTED: protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3-like isoform X1
Swissprot	Q8H0V5	1e-73	OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBL	A0A1S3YJN8	0.0	A0A1S3YJN8_TOBAC; protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3-like isoform X1
STRING	XP_009768311.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9428	23	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	5e-53	overexpressor of cationic peroxidase 3

Publications ? help Back to Top
García-Andrade J,Ramírez V,López A,Vera P Mediated plastid RNA editing in plant immunity. PLoS Pathog., 2013. 9(10): p. e1003713 [PMID:24204264] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gamir J,Pastor V,Kaever A,Cerezo M,Flors V Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina. Plant J., 2014. 78(2): p. 227-40 [PMID:24506441]