PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf29357g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 263aa MW: 31034 Da PI: 9.5537 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.4 | 3.9e-19 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++vk++G g+W+++ar g++R +k+c++rw +yl Niben101Scf29357g00002.1 18 KGPWTAEEDRLLIEYVKLHGEGRWNSVARLTGLKRNGKSCRLRWVNYL 65 79******************************9*************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.8e-16 | 71 | 115 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ Niben101Scf29357g00002.1 71 RGQITPHEERIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 115 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.175 | 13 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.14E-31 | 15 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-17 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-17 | 18 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-24 | 19 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.42E-12 | 20 | 65 | No hit | No description |
SMART | SM00717 | 6.4E-15 | 70 | 118 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.616 | 70 | 120 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.4E-14 | 71 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-24 | 73 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.34E-10 | 75 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MSNEQMGNWG ILEEGWRKGP WTAEEDRLLI EYVKLHGEGR WNSVARLTGL KRNGKSCRLR 60 WVNYLRPDLK RGQITPHEER IILELHARWG NRWSTIARSL PGRTDNEIKN YWRTHFKKKT 120 KNSCANTEKS RARLWKRQQF QQQQQQLQQQ QQEINNQIDI KRIMSLFDQN ENKVPTMLQA 180 KQEMTTLYPN TVDQQNQVGF FHSMLNGCSS VTVPEPSSDE DIMWDGLWNL DDFYGQFINT 240 TTYSKTITTP NCLQTMATTP AFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-28 | 18 | 120 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009795062.1 | 1e-158 | PREDICTED: transcription factor MYB21-like | ||||
Refseq | XP_016493463.1 | 1e-158 | PREDICTED: myb-related protein 305-like | ||||
TrEMBL | A0A1S4BX88 | 1e-156 | A0A1S4BX88_TOBAC; myb-related protein 305-like | ||||
TrEMBL | A0A1U7XSM8 | 1e-156 | A0A1U7XSM8_NICSY; transcription factor MYB21-like | ||||
STRING | XP_009795062.1 | 1e-157 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 2e-86 | myb domain protein 305 |