PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf29357g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 263aa    MW: 31034 Da    PI: 9.5537
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf29357g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.43.9e-191865148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEd ll+++vk++G g+W+++ar  g++R +k+c++rw +yl
  Niben101Scf29357g00002.1 18 KGPWTAEEDRLLIEYVKLHGEGRWNSVARLTGLKRNGKSCRLRWVNYL 65
                              79******************************9*************97 PP

2Myb_DNA-binding51.91.8e-1671115147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Niben101Scf29357g00002.1  71 RGQITPHEERIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 115
                               7888******************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.1751369IPR017930Myb domain
SuperFamilySSF466898.14E-3115112IPR009057Homeodomain-like
SMARTSM007174.1E-171767IPR001005SANT/Myb domain
PfamPF002491.6E-171865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-241972IPR009057Homeodomain-like
CDDcd001674.42E-122065No hitNo description
SMARTSM007176.4E-1570118IPR001005SANT/Myb domain
PROSITE profilePS5129419.61670120IPR017930Myb domain
PfamPF002497.4E-1471115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2473119IPR009057Homeodomain-like
CDDcd001674.34E-1075116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSNEQMGNWG ILEEGWRKGP WTAEEDRLLI EYVKLHGEGR WNSVARLTGL KRNGKSCRLR  60
WVNYLRPDLK RGQITPHEER IILELHARWG NRWSTIARSL PGRTDNEIKN YWRTHFKKKT  120
KNSCANTEKS RARLWKRQQF QQQQQQLQQQ QQEINNQIDI KRIMSLFDQN ENKVPTMLQA  180
KQEMTTLYPN TVDQQNQVGF FHSMLNGCSS VTVPEPSSDE DIMWDGLWNL DDFYGQFINT  240
TTYSKTITTP NCLQTMATTP AFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-281812027128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795062.11e-158PREDICTED: transcription factor MYB21-like
RefseqXP_016493463.11e-158PREDICTED: myb-related protein 305-like
TrEMBLA0A1S4BX881e-156A0A1S4BX88_TOBAC; myb-related protein 305-like
TrEMBLA0A1U7XSM81e-156A0A1U7XSM8_NICSY; transcription factor MYB21-like
STRINGXP_009795062.11e-157(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.12e-86myb domain protein 305