PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf26762g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 426aa    MW: 47454.8 Da    PI: 5.1222
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf26762g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011243265123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               y+C+ C+++F++   L  H  +H
  Niben101Scf26762g00005.1 243 YECKTCNRTFPSFQALGGHRASH 265
                               99**********99999998887 PP
2zf-C2H213.60.0002327349123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++Cg  F++   L  H+r+H
  Niben101Scf26762g00005.1 327 HECSYCGAEFTSGQALGGHMRRH 349
                               78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.2E-13242267IPR007087Zinc finger, C2H2
SuperFamilySSF576671.71E-8242265No hitNo description
SMARTSM003550.052243265IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.658243270IPR007087Zinc finger, C2H2
PROSITE patternPS000280245265IPR007087Zinc finger, C2H2
SuperFamilySSF576671.71E-8322349No hitNo description
Gene3DG3DSA:3.30.160.605.6E-4325351IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.7E-12327351IPR007087Zinc finger, C2H2
SMARTSM003550.0098327349IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367327354IPR007087Zinc finger, C2H2
PROSITE patternPS000280329349IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MLEAFDGGRR KIMDALEEVD VGCPNKDLFH IVKGKRTKRL RLSGVPCNNN NNNYVEDGRD  60
NGEDIACNNN NNNIEDDSGN REGIVSCKNN NNNIEDGRDN GEGIACKSNN NNNIEDGSGS  120
REGAVACENN NNNIKDDGGN GEDVADNTKN NDNNYSNPSS ANSAEIFINT FTDEEEETAK  180
SLILMSKLSD DHPRPLRFTL PPDNKVDFFN DDLRLYQTKF NSKRYIETST NSANGTKAGI  240
YVYECKTCNR TFPSFQALGG HRASHKKPKT ILITELSNKK SSYFDFSDED DYQELSPSTT  300
TLYKNNKNVT KTLPNSSNNK FSSPRIHECS YCGAEFTSGQ ALGGHMRRHR GGVNVNLPLH  360
LSNLSPATSI DQEFGNNIMK KPRDGLSLDL NIPVSDDHVD PKFPVVSLNQ QDQEQTQRQQ  420
LVDCHY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791832.10.0PREDICTED: uncharacterized protein DDB_G0283357-like
RefseqXP_016443821.10.0PREDICTED: putative uncharacterized protein DDB_G0289263
TrEMBLA0A1S3XV490.0A0A1S3XV49_TOBAC; Uncharacterized protein
TrEMBLA0A1U7XIF40.0A0A1U7XIF4_NICSY; uncharacterized protein DDB_G0283357-like
STRINGXP_009791832.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.15e-40C2H2 family protein