PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf25547g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YB | ||||||||
Protein Properties | Length: 216aa MW: 24184.5 Da PI: 9.4311 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 179 | 4.4e-56 | 92 | 184 | 1 | 93 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 vreqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcq+ekrktingddllwa+ tlGfedy+eplkv Niben101Scf25547g00008.1 92 VREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMETLGFEDYIEPLKV 176 69*********************************************************************************** PP NF-YB 86 ylkkyrel 93 yl++yre+ Niben101Scf25547g00008.1 177 YLARYREV 184 ******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.0E-53 | 87 | 184 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.42E-39 | 95 | 184 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.5E-28 | 98 | 162 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 8.2E-21 | 126 | 144 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 129 | 145 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 8.2E-21 | 145 | 163 | No hit | No description |
PRINTS | PR00615 | 8.2E-21 | 164 | 182 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
KKTKRERSWN QTNGVDRANS KTLPSSQSSP FSHFLQRPIL TFLLQSFILL SSRPNYKSPG 60 MADGQGSSRS PASPNGGGSH ESGGDQSPRS NVREQDRFLP IANISRIMKK ALPANGKIAK 120 DAKETVQECV SEFISFITSE ASDKCQKEKR KTINGDDLLW AMETLGFEDY IEPLKVYLAR 180 YREVMITAFF VSAFPCDPVQ TEYKLMDLFF CGVPAR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_A | 4e-46 | 93 | 183 | 3 | 93 | NF-YB |
4awl_B | 3e-46 | 93 | 183 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 3e-46 | 93 | 183 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4g91_B | 3e-46 | 92 | 183 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 3e-46 | 92 | 183 | 1 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009767971.1 | 6e-86 | PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X1 | ||||
Refseq | XP_009767972.1 | 6e-86 | PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 | ||||
Refseq | XP_016510778.1 | 6e-86 | PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 | ||||
Refseq | XP_016510785.1 | 6e-86 | PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X3 | ||||
Swissprot | Q8VYK4 | 1e-68 | NFYB8_ARATH; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | M0ZNB5 | 7e-89 | M0ZNB5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400004366 | 1e-89 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37060.3 | 4e-71 | nuclear factor Y, subunit B8 |
Publications ? help Back to Top | |||
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