PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf25485g00009.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 224aa MW: 24620.9 Da PI: 8.7097

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf25485g00009.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	63.4	9.3e-20	23	68	1	46
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsll 46 +d+++sse++Cyv+C+fCnt+lav +P++ l+ +vtv+CGhCt+l Niben101Scf25485g00009.1 23 MDLVQSSEHLCYVRCSFCNTVLAVGIPYKRLLDTVTVKCGHCTNLS 68 57899**************************************984 PP
2	YABBY	110.9	2.4e-34	79	208	14	163
YABBY 14 qCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 qC +t l v +P++ l+ +vtv+CGhCt+l ++ + l+ + ++ ++ +++++ s k+ ++s+s Niben101Scf25485g00009.1 79 QCFDHQTALQVGIPYKRLLDTVTVKCGHCTNLSFLSTR---------PPLQGQCFDH---QTALQHQAFFSDI-KKGQSSSSS-- 148 566679**********************98553322.........2222222222...2233334443333.333333333.. PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 +++ ++p++p v++PPek+ r Psayn f+k+eiqrika+nP+i hreafsaaaknWa + Niben101Scf25485g00009.1 149 -----SSEPSSPKAPFVVKPPEKKHRLPSAYNWFMKDEIQRIKAANPEIPHREAFSAAAKNWARY 208 .....33457899999*********************************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	8.6E-19	28	77	IPR006780	YABBY protein
Pfam	PF04690	1.5E-41	80	208	IPR006780	YABBY protein
SuperFamily	SSF47095	2.62E-8	152	206	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.4E-4	162	207	IPR009071	High mobility group box domain
CDD	cd00084	4.31E-5	169	205	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MSSSSPSSAS SCVNLEAADR NSMDLVQSSE HLCYVRCSFC NTVLAVGIPY KRLLDTVTVK 60 CGHCTNLSFL STRPPLQGQC FDHQTALQVG IPYKRLLDTV TVKCGHCTNL SFLSTRPPLQ 120 GQCFDHQTAL QHQAFFSDIK KGQSSSSSSS EPSSPKAPFV VKPPEKKHRL PSAYNWFMKD 180 EIQRIKAANP EIPHREAFSA AAKNWARYIP NTPNGTLAES SNNA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for the initiation of nectary development. Also involved in suppressing early radial growth of the gynoecium, in promoting its later elongation and in fusion of its carpels by regulating both cell division and expansion. Establishes the polar differentiation in the carpels by specifying abaxial cell fate in the ovary wall. Regulates both cell division and expansion. {ECO:0000269\|PubMed:10225997, ECO:0000269\|PubMed:10225998, ECO:0000269\|PubMed:10535738, ECO:0000269\|PubMed:11714690, ECO:0000269\|PubMed:15598802, ECO:0000269\|Ref.10}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by SPT and by A class genes AP2 and LUG in the outer whorl. In the third whorl, B class genes AP3 and PI, and the C class gene AG act redundantly with each other and in combination with SEP1, SEP2, SEP3, SHP1 and SHP2 to activate CRC in nectaries and carpels. LFY enhances its expression. {ECO:0000269\|PubMed:10225998, ECO:0000269\|PubMed:15598802}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009797005.1	1e-104	PREDICTED: protein CRABS CLAW
Refseq	XP_016465526.1	1e-104	PREDICTED: protein CRABS CLAW-like
Refseq	XP_019267264.1	1e-104	PREDICTED: protein CRABS CLAW isoform X1
Swissprot	Q8L925	5e-55	CRC_ARATH; Protein CRABS CLAW
TrEMBL	A0A1U7YDY2	1e-103	A0A1U7YDY2_NICSY; protein CRABS CLAW
TrEMBL	A0A314KZM7	1e-103	A0A314KZM7_NICAT; Protein crabs claw
TrEMBL	Q5EMN2	1e-103	Q5EMN2_TOBAC; CRABS CLAW
STRING	XP_009797005.1	1e-104	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5210	23	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	2e-56	YABBY family protein

Publications ? help Back to Top
Fourquin C,Primo A,Martínez-Fernández I,Huet-Trujillo E,Ferrándiz C The CRC orthologue from Pisum sativum shows conserved functions in carpel morphogenesis and vascular development. Ann. Bot., 2014. 114(7): p. 1535-44 [PMID:24989787] Pfannebecker KC,Lange M,Rupp O,Becker A Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776] Yamaguchi N,Huang J,Xu Y,Tanoi K,Ito T Fine-tuning of auxin homeostasis governs the transition from floral stem cell maintenance to gynoecium formation. Nat Commun, 2017. 8(1): p. 1125 [PMID:29066759] Yamaguchi N, et al. Chromatin-mediated feed-forward auxin biosynthesis in floral meristem determinacy. Nat Commun, 2018. 9(1): p. 5290 [PMID:30538233]