PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf24758g01002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 705aa    MW: 76839.1 Da    PI: 6.4199
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf24758g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41e-17218272256
                               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Niben101Scf24758g01002.1 218 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 272
                               678899***********************************************98 PP
2Homeobox55.41e-17518572256
                               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Niben101Scf24758g01002.1 518 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 572
                               678899***********************************************98 PP
3HD-ZIP_I/II126.11.5e-40218307191
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               +kk+rlskeq++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +
  Niben101Scf24758g01002.1 218 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQ 302
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreel 91 
                               eLr +l
  Niben101Scf24758g01002.1 303 ELR-AL 307
                               **9.55 PP
4HD-ZIP_I/II126.11.5e-40518607191
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               +kk+rlskeq++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +
  Niben101Scf24758g01002.1 518 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQ 602
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreel 91 
                               eLr +l
  Niben101Scf24758g01002.1 603 ELR-AL 607
                               **9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-17199272IPR009057Homeodomain-like
SuperFamilySSF466892.74E-18209275IPR009057Homeodomain-like
PROSITE profilePS5007117.167214274IPR001356Homeobox domain
SMARTSM003895.1E-16216278IPR001356Homeobox domain
CDDcd000866.98E-15218275No hitNo description
PfamPF000464.4E-15218272IPR001356Homeobox domain
PROSITE patternPS000270249272IPR017970Homeobox, conserved site
PfamPF021831.4E-10274308IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.6E-25274317IPR003106Leucine zipper, homeobox-associated
Gene3DG3DSA:1.10.10.603.5E-17499572IPR009057Homeodomain-like
SuperFamilySSF466892.74E-18509575IPR009057Homeodomain-like
PROSITE profilePS5007117.167514574IPR001356Homeobox domain
SMARTSM003895.1E-16516578IPR001356Homeobox domain
CDDcd000866.98E-15518575No hitNo description
PfamPF000464.4E-15518572IPR001356Homeobox domain
PROSITE patternPS000270549572IPR017970Homeobox, conserved site
PfamPF021831.4E-10574608IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.6E-25574617IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MELGLSLGDT NTSTTTTAAA ASSKSFFLSK NIKTSCSDQN HSKKKRKGLG FCMALGINSS  60
NGKFQEQHGD DDEENPEKSH DDEDDEDDEH TSEEGNINGN TPVQLDLLPL APVPRRSFPQ  120
SLHWSSDNGS SENGSSGNGG LPAARGFDVN RVPAAGTEEV SSPNSIASSF QMDFGLFRSA  180
NIVGNKRNSD SGGGNDGGEP ERASSRASDE DENGVNTRKK LRLSKEQSAY LEESFKEHHT  240
LNPKQKLALA KQLNLRPRQV EVWFQNRRAR TKLKQTEVDC EYLKRCCETL TEENRRLHKE  300
LQELRALKSS NPFYMQLPAT TLTMCPSCER VATTTSAAAA PPTTAAGTTT PKAPTPVTTT  360
TTTTTTTTTS NSMPXPEKSH DDEDDEDDEH TSEEGNINGN TPVQLDLLPL APVPRRSFPQ  420
SLHWSSDNGS SENGSSGNGG LPAARGFDVN RVPAAGTEEV SSPNSIASSF QMDFGLFRSA  480
NIVGNKRNSD SGGGNDGGEP ERASSRASDE DENGVNTRKK LRLSKEQSAY LEESFKEHHT  540
LNPKQKLALA KQLNLRPRQV EVWFQNRRAR TKLKQTEVDC EYLKRCCETL TEENRRLHKE  600
LQELRALKSS NPFYMQLPAT TLTMCPSCER VATTTSAAAA PPTTAAGTTT PKAPTPVTTT  660
TTTTTTTTTS NSMPKAIPFL NSRPRFFPFN TTTNSPNHPH QSAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1516522TRKKLRL
2566574RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767401.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like
SwissprotP466656e-89HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1U7VR320.0A0A1U7VR32_NICSY; homeobox-leucine zipper protein HOX11-like
STRINGXP_009767401.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.18e-65homeobox from Arabidopsis thaliana