PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf23013g00006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 843aa    MW: 92250.1 Da    PI: 5.2424
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf23013g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.8e-095683127
                              --S---SGGGGTS.--TTTTT-SS-SSS CS
                   zf-CCCH  1 yktelCrffartG.tCkyGdrCkFaHgp 27
                              +kt+lC++f+r+   C++G++C++aHg+
  Niben101Scf23013g00006.1 56 WKTSLCSYFRRNDnSCSHGETCRYAHGE 83
                              8**********87*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-125189IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-65488IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3055584IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-45583IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-65683IPR000571Zinc finger, CCCH-type
PROSITE profilePS5168742.381261841IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533355.09E-49264289IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533355.09E-49321456IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533355.09E-49502616IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1502.3E-63511616IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138478.1E-10561617IPR025714Methyltransferase domain
CDDcd024405.45E-8562634No hitNo description
Gene3DG3DSA:3.40.50.1502.3E-63723778IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059583.8E-8726774IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533355.09E-49726839IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PROSITE patternPS012300734766IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1502.3E-63815839IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MSTETLNPKI NGEDLTEQLH PPEPSTNPRV EISPTEKRKR EETETKQQLQ QPSPLWKTSL  60
CSYFRRNDNS CSHGETCRYA HGESELRPRP DNNWDPTSER AKKMAKKDDD GEKAENKEEK  120
CNDVMMTEVL DDEEECSSSG TGLSKCLVNL PMKWSSDNLR CFLKQHDVIF KSAKKKKGMV  180
VGFELNGKLV GNKNLKVGDV ILRPFERKGN SAISSSPASQ QGEKQTPTGD SLDSTKISDE  240
TEAEDPLCSD SVLKGRSVRD VVTPLANIPY ADQLEQKKRS LMQSLKKLTR NARKACPNGV  300
SLPEWILKSR EIGGQPCKLE GIIDSPLIEG YRNKCEFSVG YSVLGKPTAG FLLGNFREGV  360
TAVEEPLNCP NVSRIACKYA AIFQEFLQQS TLSIWNRLNN TGFWRQLTVR EGRMPGNNVE  420
VENPDASISE VMLIVQVCTL GLDDAVVNDE FQSMAKAFAM GASSASPTLP LTVLVVQDHT  480
GISNVAPADA PLRVLPFPKG ESYSELQADN IVAEAKIHDF INGLKFCISP TAFFQVNTLA  540
AEKLYSLAGD WARLCPDTLL FDVCCGTGAI GLTLANRVGM VVGIEMNASA VSDAQRNAEI  600
NGIKNCRFIC GKAEDFMGSV LREYLTSPPK VDGIPDIQEN TTSTEKTDSI VNASETDEGS  660
GIGSATAPIG NTDSDDNTVE PEGKEGLERT DGTSLSETSV DGITESETQL GKSCSSDNLT  720
TSVRHFKNVV AIVDPPRAGL HPTVIKLLRT NSRLRRLVYI SCNPESLVAN AIELCTPSPN  780
ESERGNNKNN RGWRKMSSAS LARHRTKSMP SSEPFQPVKA MAVDLFPHTP HCELVMLLES  840
CAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A6e-1930063086384Uncharacterized RNA methyltransferase SP_1029
5xj2_A7e-1930063086384Uncharacterized RNA methyltransferase SP_1029
5xj2_B7e-1930063086384Uncharacterized RNA methyltransferase SP_1029
5xj2_C7e-1930063086384Uncharacterized RNA methyltransferase SP_1029
5xj2_D7e-1930063086384Uncharacterized RNA methyltransferase SP_1029
5zq0_A7e-1930063087385Uncharacterized RNA methyltransferase SP_1029
5zq1_A7e-1930063086384Uncharacterized RNA methyltransferase SP_1029
5zq8_A7e-1930063086384Uncharacterized RNA methyltransferase SP_1029
5zq8_B7e-1930063086384Uncharacterized RNA methyltransferase SP_1029
5zth_A7e-1930063087385Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019226002.10.0PREDICTED: zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A314KSH50.0A0A314KSH5_NICAT; Zinc finger ccch domain-containing protein 24
STRINGXP_009592143.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA807488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]