PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf21083g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 93aa MW: 10593.2 Da PI: 10.686 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00038 | 35 | 50 | 1 | 16 |
EEETTTTEEESSHHHH CS zf-C2H2 1 ykCpdCgksFsrksnL 16 ++C+ C+k+Fs+ L Niben101Scf21083g00004.1 35 FECKTCNKRFSSFQAL 50 89*********97777 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 8.0E-4 | 24 | 49 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF13912 | 2.2E-10 | 35 | 56 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.85 | 35 | 62 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 93 aa Download sequence Send to blast |
MKRSREEDSD VEAQAMANCS MLLSRLNDTI KTSSFECKTC NKRFSSFQAL GGHRTSRKSL 60 RSSSMVAKSK SKITKNNMHQ WSICGMEFFM GRL |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009594751.2 | 3e-47 | PREDICTED: zinc finger protein ZAT11-like | ||||
Refseq | XP_016508476.1 | 3e-47 | PREDICTED: zinc finger protein ZAT11-like | ||||
TrEMBL | A0A1S4D523 | 7e-46 | A0A1S4D523_TOBAC; zinc finger protein ZAT11-like | ||||
STRING | XP_009594751.1 | 1e-46 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28710.1 | 6e-19 | C2H2 family protein |