PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf20316g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 472aa    MW: 53153.8 Da    PI: 7.6129
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf20316g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.61.3e-41168243277
                               -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                       SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                               Cqv gC++dls  k+yh+rhkvC+ hsk+++v+v+g+eqrfCqqCsrfh l efDe+krsCr+rLa+hnerrrk+q
  Niben101Scf20316g00003.1 168 CQVYGCNKDLSPSKDYHKRHKVCDEHSKSAKVIVDGIEQRFCQQCSRFHLLAEFDEGKRSCRKRLAGHNERRRKPQ 243
                               **************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.1E-34162229IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.394165242IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.89E-39166247IPR004333Transcription factor, SBP-box
PfamPF031104.2E-32168241IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MFGTIQEITE NIELPESGIA DILKKCATSD QGSEGLGAEK VDSSRKMLSI SVNTLDSILG  60
EVELKERSNH IANRCNDPVS LPIGLKLEQL VDHRAVRSIS SSKGSSLLSL ADSLLPAEKA  120
HSQEDDLIVY KVKSNSSLME NPALSSLEQL LLGKRSRTTN VHSQVPLCQV YGCNKDLSPS  180
KDYHKRHKVC DEHSKSAKVI VDGIEQRFCQ QCSRFHLLAE FDEGKRSCRK RLAGHNERRR  240
KPQFDTHWGS RLFEMTSQRR ASFLFPEIHP GSSFSQERFE DHSKHIKLEE KPICISQLDM  300
AVTKKQSPLK SFQHHPRATF SVQELPAGQN SACAPSLLSV HSQHHLHNSE NHCPHLKRDH  360
NLNFCGLSDS RSFTSNGLYS SEVFEIDRIV QVLDDSQAVS TDDLGERCVR RSNTMNSKHD  420
LSLEDGPTMD LVQLSSHLQR VEQLKNSDQV KQENDIFRCF TTTRGLRKLQ GV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-29163241684squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267266.10.0PREDICTED: squamosa promoter-binding-like protein 6
TrEMBLA0A314KYL70.0A0A314KYL7_NICAT; Squamosa promoter-binding-like protein 6
STRINGXP_009600444.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68311933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.13e-52SBP family protein