PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf19733g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 385aa    MW: 42790.2 Da    PI: 4.5539
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf19733g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-19114163255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  +++++g
  Niben101Scf19733g00001.1 114 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDVEARRIRG 163
                               69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-32114173IPR001471AP2/ERF domain
SMARTSM003803.1E-36114177IPR001471AP2/ERF domain
CDDcd000187.09E-33114172No hitNo description
PROSITE profilePS5103224.105114171IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-22114173IPR016177DNA-binding domain
PRINTSPR003671.2E-11115126IPR001471AP2/ERF domain
PfamPF008479.2E-12115163IPR001471AP2/ERF domain
PRINTSPR003671.2E-11137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MCGGAIISDY IAPSRTSRRL TAELLWGRSD LSKKQKNPTD YHSKPLRSQV VDLDDDFEAD  60
FQDFKDFSDD EEVEVDVKPF AFSASKTFEG SKSVKTVYSD KDADRSSKRK RKNQYRGIRQ  120
RPWGKWAAEI RDPRKGVRVW LGTFNTAEEA ARAYDVEARR IRGNKAKVNF PDEAPVPASR  180
RTVKLNHQKG LPKESLDSVQ PDSTIMNNME DGCYDSLGFL EEKPMTKQYG YEDGRSTSGD  240
TGFGSFAPSA GTSIYFNSDV GSNSFDCSDF GWGEPCARTP EISSVLSAAI ESNESQLVED  300
DASPMKKLKS SPINPVADDE NTANKLSEEL SAFESQMKFL QIPYLEGNLD ASVDTFLNSS  360
ATQDGENAMD LWSFDDVPSL MGGVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21114171260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019259974.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A314LCS50.0A0A314LCS5_NICAT; Ethylene-responsive transcription factor rap2-12
STRINGXP_009775920.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.24e-60related to AP2 12