PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf19371g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 461aa    MW: 50206.8 Da    PI: 8.2714
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf19371g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.41.3e-40168245178
                               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                       SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                               +CqvegC+ dls+akey+r+h+vC+ hsk+p+v+++g+e+rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+
  Niben101Scf19371g00001.1 168 RCQVEGCSLDLSSAKEYYRKHRVCDSHSKCPKVIIAGVERRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQQ 245
                               6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.3E-33162230IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.368166243IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.02E-38167248IPR004333Transcription factor, SBP-box
PfamPF031104.8E-31169242IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MEWNAKWDWG NLVMFGSEAA KSPKELQLTD WGVEEDGELD GGSFNLSSGG SGSGTGGYVS  60
DVGRGSSIKS SISASTDSSP KEGLKASNFS FDDSPEDLSK KMKLCSRNSS SMEASVGSVE  120
PLIGLKLGKR TFETIGGAKV SSFPEKHVSS AAAAKKTKSS TQNAPTPRCQ VEGCSLDLSS  180
AKEYYRKHRV CDSHSKCPKV IIAGVERRFC QQCSRFHSLS EFDEKKRSCR RRLSDHNARR  240
RKPQQETIQF NSARFSSLFY DSRQPMNLVL DHSQLVQSRA AANSTWESTE ETKFSITRGS  300
PPKPERTGST NGQSLLPGIQ LSRTVGAHSN VSSCLLLPSK GHTAEVFNRG ATESMFNMGT  360
GREFPRALSL LSTNSWGSSE PETVSLNHPT HANQSSMPEQ MMQAIPQGVP LMSCEYWQGG  420
QPSSDPRDHT LAANSHAGGS FQGIELFKPP FDTDFYLNAL N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-261692421184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224241KKRSCRRRLSDHNARRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019226025.10.0PREDICTED: squamosa promoter-binding-like protein 3
RefseqXP_019226026.10.0PREDICTED: squamosa promoter-binding-like protein 3
TrEMBLA0A314KU740.0A0A314KU74_NICAT; Squamosa promoter-binding-like protein 3
STRINGXP_009766987.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41292444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-57squamosa promoter binding protein-like 2