PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf19180g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 318aa    MW: 35352.4 Da    PI: 7.9087
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf19180g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.6e-151462148
                              TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                              +g+W++eEd +l+d++++ G+g +W + + + g++R++k+c++rw++yl
  Niben101Scf19180g00004.1 14 KGPWSPEEDAKLKDYIQKSGTGgNWIALPLKAGLRRCGKSCRLRWLNYL 62
                              79*********************************************97 PP
2Myb_DNA-binding35.72.1e-1169111246
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               g ++ eEd  +  + +  G++ W+ Ia  ++ gRt++++k++w++
  Niben101Scf19180g00004.1  69 GEFSDEEDRVICSLYASIGSR-WSIIAGQLP-GRTDNDIKNYWNT 111
                               789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.749962IPR017930Myb domain
SuperFamilySSF466892.11E-2611109IPR009057Homeodomain-like
SMARTSM007171.3E-101364IPR001005SANT/Myb domain
PfamPF002491.3E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-231569IPR009057Homeodomain-like
CDDcd001674.12E-81662No hitNo description
PROSITE profilePS5129421.67463117IPR017930Myb domain
SMARTSM007171.5E-1067115IPR001005SANT/Myb domain
PfamPF002498.6E-1069111IPR001005SANT/Myb domain
CDDcd001671.77E-770113No hitNo description
Gene3DG3DSA:1.10.10.605.4E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKDYIQ KSGTGGNWIA LPLKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRVIC SLYASIGSRW SIIAGQLPGR TDNDIKNYWN TKLKKKLMGF  120
VSSSQKIRPF HQNQHQITTG YNNYYPQILP YSSPSTTLTT LADYKYSNNN AFPCYETIPT  180
IPSSSFLNTS AAASCTSGIT ASTSPTLQIQ ESNYVGATTT TTSSDGSAEY GNLDFHSYIY  240
NGVIGNEDDQ SNSKFLIEGG GKPINGNSCY VEQQNPLDYS SLEEIKQLIS SNNNNNVTCN  300
SNLFLDENKI EGKVMMYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-26141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780529.10.0PREDICTED: transcription factor RAX2-like
RefseqXP_016489211.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A1S4BK220.0A0A1S4BK22_TOBAC; transcription factor RAX2-like
TrEMBLA0A1U7X0X50.0A0A1U7X0X5_NICSY; transcription factor RAX2-like
STRINGXP_009780529.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.16e-77myb domain protein 36