PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf18955g00004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 339aa MW: 37912.4 Da PI: 7.388

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf18955g00004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.9	6.2e-30	44	94	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQ Niben101Scf18955g00004.1 44 KPRLKWTPDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQ 94 79************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.084	41	101	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-27	42	94	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.17E-14	43	96	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-20	44	94	IPR006447	Myb domain, plants
Pfam	PF00249	9.4E-9	46	94	IPR001005	SANT/Myb domain
Pfam	PF14379	1.0E-7	91	114	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MYHHHRQDKS MHPSTRMSIS ERHLFLQGGN GNGDSGLVLS TDAKPRLKWT PDLHERFIEA 60 VNQLGGADKA TPKSVLKLMG IQGLTLYHLK SHLQLRIEAQ GKYLHAVLEK AQETLGRQDM 120 GTVGLEAAKV QLSELVSTVS NQCLNPTFSD IKELSRFSSQ QTQATRLADR SIDSCLTSCE 180 GSLRDSTTHN NQIGLRPFEF TPSIECKDIE NDTRIQQTAL RWRDNLKESK KLFSATNEGK 240 EKTFTTETNC KDLSMSIGLQ DGNLNGSSNH SDGKFNGTDT AVRLFHQAAN RGDSMPERQK 300 SSQEYKLSYF APKLDLNMHD ETDAASSCKQ FDLNGFSWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-20	43	94	1	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-20	43	94	1	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-20	44	94	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-20	44	94	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-20	44	94	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-20	44	94	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-20	43	94	1	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-20	43	94	1	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-20	43	94	1	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-20	43	94	1	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-20	43	94	1	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-20	43	94	1	52	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009758035.1	1e-176	PREDICTED: uncharacterized protein LOC104210771 isoform X1
Refseq	XP_009758037.1	1e-176	PREDICTED: uncharacterized protein LOC104210771 isoform X1
Refseq	XP_016462509.1	1e-176	PREDICTED: uncharacterized protein LOC107785672 isoform X1
Refseq	XP_016462510.1	1e-176	PREDICTED: uncharacterized protein LOC107785672 isoform X1
Swissprot	Q9SQQ9	1e-44	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A1S3ZDT3	1e-175	A0A1S3ZDT3_TOBAC; uncharacterized protein LOC107785672 isoform X1
TrEMBL	A0A1U7V8C0	1e-175	A0A1U7V8C0_NICSY; uncharacterized protein LOC104210771 isoform X1
STRING	XP_009758035.1	1e-175	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2946	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	5e-47	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]