PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf18898g00012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 828aa    MW: 93418.1 Da    PI: 5.7693
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf18898g00012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.4e-14259305354
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               ++h + Er+RR ++N+++  Lr+++P++      K++ a+i++ A+eYI++L
  Niben101Scf18898g00012.1 259 TKHFATERQRRLHLNDKYKALRSMVPNP-----SKNDRASIVKDAIEYINEL 305
                               78*************************9.....7***************998 PP
2HLH28.52.7e-09637682454
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               +h   E++RR +  ++f+ Lr l+P++      K++ a+i   A+ YI++L
  Niben101Scf18898g00012.1 637 KHHTSEKQRRVHFSDKFQALRALIPNP-----SKNDRATIIADAIGYINML 682
                               68899*********************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.218256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-11259305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.43E-12259310No hitNo description
Gene3DG3DSA:4.10.280.107.2E-14259317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-15259324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-12262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-13631696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.697633682IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-7637682IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-12637697IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.07E-8637686No hitNo description
SMARTSM003531.1E-6639688IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 828 aa     Download sequence    Send to blast
MYVESDCFDP AASVQHENVF GIEENTYQQD AAIVAAAALE MQLQQQLNLE MEQCFNTTPN  60
NNNSMQELVH EHNNQGISCD QSNWGEMSFP SYQNQEDNSN NFQHAAHDIQ NGHDQQPYLP  120
TPDLLNMFPL PRSSISYTNT NTNQASNLLT SLGLLGDINI PATADGASNP SSIYDPSLLP  180
LNLPPQPPLL RELFHSLPHG YGLRNLRSTT SFFNGLEERD QLSGALYQDG EERPFDNGIF  240
EFSADMNGIA KNRDIGKDTK HFATERQRRL HLNDKYKALR SMVPNPSKND RASIVKDAIE  300
YINELKREVH DLELMVEKKR CSRDRIKRQK TEEGGNSMDD SNAKKMDEVD QSYNGNSLRS  360
SWLQRRSKNT EVDVRVVDDE VTIKLVQQKR VNCLLFASKV LDDLQLDLHH VAGGLIGDYY  420
SFLFNSKQDE GIEEKGLLQN HSTTCATNFS MGVELQQQQQ LNLEMVKFHS ILNTNIVPTE  480
NNVIQEFEHE HNNNTVLSYG QANWEEMGFN PYNHQQGHVQ HQISNFPIST LITNNPSNTS  540
LGHWVGFPRT ELASTSTNLF YEPQLNMPVN LCNPQPSLFK ELFQLSPHGS YGLGSSGTGS  600
FFSHGVAEEE VTGALYHDAG SFDIKSAARK REGKDIKHHT SEKQRRVHFS DKFQALRALI  660
PNPSKNDRAT IIADAIGYIN MLKTKVNELK NEVEKKKRVK RQRTEDGSCG FNTVMAEAAE  720
NNVSIRSSWL QKKSKNTEVD VKIMDDEVTV KLVQQQKIIN CLLFVSKAFD EFQLDLHHVS  780
GGLIGDHHSY IFNSKICEGS TVYASAIANK VIEVLDKEYS AIVPSCNL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788149.10.0PREDICTED: transcription factor bHLH91-like
RefseqXP_016475217.10.0PREDICTED: transcription factor bHLH91-like
TrEMBLA0A1S4AEW60.0A0A1S4AEW6_TOBAC; transcription factor bHLH91-like
TrEMBLA0A1U7XMH40.0A0A1U7XMH4_NICSY; transcription factor bHLH91-like
STRINGXP_009788149.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26962351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.12e-52bHLH family protein