PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf18896g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 229aa    MW: 26132.8 Da    PI: 5.5471
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf18896g00010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-171562148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg+WT eEd  l++ ++++G g+W++ ar+ g++Rt+k+c++rw++yl
  Niben101Scf18896g00010.1 15 RGSWTVEEDFTLINHIALHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 62
                              89********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.2391066IPR017930Myb domain
SuperFamilySSF466891.42E-161067IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-201365IPR009057Homeodomain-like
SMARTSM007173.4E-151464IPR001005SANT/Myb domain
PfamPF002498.0E-161562IPR001005SANT/Myb domain
CDDcd001673.82E-121762No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDIQHVNKDN MDLKRGSWTV EEDFTLINHI ALHGEGRWNS LARCAGLKRT GKSCRLRWLN  60
YLRPDHAKQL KCDVNSKQFK DTLRYLWMPR LVERIQASSN SAATTTITTT SNNSINNNNN  120
NNNHASTSIT HENSSVTASS ENSMGTQVSP VSDISDCCYN NYPINQSDYG ELLISPTGYF  180
QHGALDFRTV DYNNQQNMSQ WMEGTEDVSD NLWNIEDMLF LQQQLNNDV
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799770.11e-134PREDICTED: transcription factor MYB108-like
RefseqXP_016494481.11e-134PREDICTED: transcription factor MYB108-like
SwissprotQ9FGY35e-50MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A1S4C0051e-132A0A1S4C005_TOBAC; transcription factor MYB108-like
TrEMBLA0A1U7YLQ81e-132A0A1U7YLQ8_NICSY; transcription factor MYB108-like
STRINGXP_009799770.11e-133(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13972375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-45myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]