PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf18896g00010.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 229aa MW: 26132.8 Da PI: 5.5471

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf18896g00010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.8	1e-17	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l++ ++++G g+W++ ar+ g++Rt+k+c++rw++yl Niben101Scf18896g00010.1 15 RGSWTVEEDFTLINHIALHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 62 89********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.239	10	66	IPR017930	Myb domain
SuperFamily	SSF46689	1.42E-16	10	67	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-20	13	65	IPR009057	Homeodomain-like
SMART	SM00717	3.4E-15	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	8.0E-16	15	62	IPR001005	SANT/Myb domain
CDD	cd00167	3.82E-12	17	62	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MDIQHVNKDN MDLKRGSWTV EEDFTLINHI ALHGEGRWNS LARCAGLKRT GKSCRLRWLN 60 YLRPDHAKQL KCDVNSKQFK DTLRYLWMPR LVERIQASSN SAATTTITTT SNNSINNNNN 120 NNNHASTSIT HENSSVTASS ENSMGTQVSP VSDISDCCYN NYPINQSDYG ELLISPTGYF 180 QHGALDFRTV DYNNQQNMSQ WMEGTEDVSD NLWNIEDMLF LQQQLNNDV

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt (NaCl). {ECO:0000269\|PubMed:16463103}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009799770.1	1e-134	PREDICTED: transcription factor MYB108-like
Refseq	XP_016494481.1	1e-134	PREDICTED: transcription factor MYB108-like
Swissprot	Q9FGY3	5e-50	MYB78_ARATH; Transcription factor MYB78
TrEMBL	A0A1S4C005	1e-132	A0A1S4C005_TOBAC; transcription factor MYB108-like
TrEMBL	A0A1U7YLQ8	1e-132	A0A1U7YLQ8_NICSY; transcription factor MYB108-like
STRING	XP_009799770.1	1e-133	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1397	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	2e-45	myb domain protein 78

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]