PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf18731g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 180aa    MW: 20222.5 Da    PI: 10.2473
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf18731g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00044668123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C+ C+k+F++   L  H  +H
  Niben101Scf18731g00005.1 46 FECKTCNKRFPSFQALGGHRASH 68
                              89**********99999998887 PP
2zf-C2H214.40.0001190112123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++Cg+ Fs    L  H+r+H
  Niben101Scf18731g00005.1  90 HECSICGMEFSLGQALGGHMRRH 112
                               78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0754668IPR015880Zinc finger, C2H2-like
PfamPF139126.5E-134670IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.2214673IPR007087Zinc finger, C2H2
SuperFamilySSF576673.05E-946112No hitNo description
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-487113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.06790112IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-990115IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.11890117IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MTGMKRSREE DRQVEAEAMA NCALMLLSRI NNNNATSTDR DYHNNFECKT CNKRFPSFQA  60
LGGHRASHKR PKILPGAGDF LVQSKKNKMH ECSICGMEFS LGQALGGHMR RHRDEINKTS  120
MAARKTITPV VGKKMIPVLK KSNSSKRICC LDLNLTPDVD VDLKLWPTAP VSSPVLRCFF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782299.11e-120PREDICTED: zinc finger protein ZAT12-like
RefseqXP_016442063.11e-120PREDICTED: zinc finger protein ZAT12-like
SwissprotQ9SLD41e-35ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A1S3XQ461e-119A0A1S3XQ46_TOBAC; zinc finger protein ZAT12-like
TrEMBLA0A1U7X5Y51e-119A0A1U7X5Y5_NICSY; zinc finger protein ZAT12-like
STRINGXP_009782299.11e-120(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-39C2H2 family protein