PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf18660g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 301aa MW: 33520.1 Da PI: 4.5074 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.5 | 1.3e-12 | 17 | 60 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT E + l++a +G + Wk++a+++g gR+ k+c+ r+ k+ Niben101Scf18660g00007.1 17 TDWTDKETLHLLEALMHYGDD-WKKVAEHVG-GRSTKECVARFVKL 60 57*****************88.*********.**********9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 20.436 | 14 | 65 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 1.72E-13 | 15 | 69 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.3E-10 | 15 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-9 | 15 | 57 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.0E-12 | 17 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.43E-8 | 19 | 60 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MNTSDFRRVE ISEEVKTDWT DKETLHLLEA LMHYGDDWKK VAEHVGGRST KECVARFVKL 60 PFGEQFMGPP VSAEVDNEPG TETMLLPSKR MRLTPLADAS NPIMAQAAFL SALAGKEVAE 120 LAAHAAVTAL SENCEEIMKG SLTSLPGVLE KQKTDGTSNG HAKDTLERAL VEARSQLEEE 180 AQDLERAVSD VAIETREIED KIARFEERDL QMEKEWQQLM QLKSLIFFDQ LTLLLNKVGA 240 TKAGETIGEE VMNVKAEGQI PLFPEKQQRL PILKENNTRD LKSAGLAELE MEINVYSAIP 300 P |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. May play an essential role in the transition from the vegetative to the reproductive phase of development. May be a positive regulator of ABA signaling. {ECO:0000269|PubMed:12140326, ECO:0000269|PubMed:14682613, ECO:0000269|PubMed:16055636, ECO:0000269|PubMed:19033529}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019244823.1 | 1e-176 | PREDICTED: SWI/SNF complex subunit SWI3B-like | ||||
Swissprot | Q84JG2 | 1e-59 | SWI3B_ARATH; SWI/SNF complex subunit SWI3B | ||||
TrEMBL | A0A1J6J9K3 | 1e-174 | A0A1J6J9K3_NICAT; Swisnf complex subunit swi3b | ||||
STRING | XP_009782744.1 | 1e-174 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10001 | 2 | 2 |